RNA id: XM_021590273.2


Basic Information

Item Value
RNA id XM_021590273.2
length 2538
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110509374
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29973566 ~ 29977591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAACCTAAGCATGGGCACACAGGTGCTAGAACAGGACTGAAGGGTCACCTGGACTTTCGTTAATAACTTTTTTGGGGGATCAAGCAGGTGAACTTTGACACCACCACTAACAAATCCAGGAGATACCAATTAAGATACACTGTTCAGTATTTTGTGGCTTTTATTTCTCCCCACAGATTTTGTTCACTAAACAATTTTGGTCTGATTATTCCTTATTTTCTTTTGGATTACAAACCCATCTTTCTCCTACAAGAATCCTCTAACCATCTCTCCTTTGAAAAACAATCATCGAATCAGTCAACTTCATTTAAAACTGAATTCTACCTGTTGCACTTCAAGTTTTTCCAGACATACTCTTCACCTTTGACCTTACCCACCCTTTCCAGGTCGCCTCTCAGATCATTCCAGTAGTCAGTCGCTGCACTCTCCTCCTTCCCCACAGATCCCACTCATCATCCCTTCATCACCACATTCCTAATTTATTTCTCCCAGTAACCCTCGGAGCCTCCGTGGGCTCCCACCACCTCCATGGTGCTGATGAAGATGAAGTTCCCTTTTGAGAAGAGGGTGAAGCTGGCCCAGGGGCTGTGGCTGCTCTCCTGGATGGCCACACTGGCCGGAGCGTTCACCTTCACCCTGGGCTGCTTCCTCAAGACCGAACTCCGCAGGAGGGCAGAGGTAATGGACAACACAGAGATCCATGCTGTGCCCAACACCCTGATGATAGTGGGTCTGGCCTCTCTGGGTATCAACTACTTCGCAGGCCGTATGTGCCAGGATGCGCTGGATGCCGGACGCTTTCCCCGCTGGAAAACCTTCATGCAACCCTACTGGGGTGTTTCCCTCCTCTTCACCCTGCTCATGTTGATGGCTGTGATCATGAGCTATGCCATGAAGGGGAACCTGGAGTCCTCCCTGAAGATTGGCCTGAAGAACGGCATCCGCTTCTACAAGGACACAGATACCCCCGGCCGCTGCTTCCAGAAGCAGAACATTGACCGCCTGCAGATGGAGTTCCGTTGCTGCGGAAACACCGACTTCAAGGACTGGTTCGAGGTCCAGTGGATCAGCAACCGCTACCTAGACTTTAGCTCTAAGGAAGTGAAGGAccGTGTTAAGAGCAATGTGGATGGGCGTTACCTGTTTGATGGGGTCCCTTTCAGCTGCTGCAACCCCAGTTCCCCAAGACCCTGCATCCAGGACCGCCTCACCAACAACTCAGCCCACTACAGCTATGAGCACCAGACCGAGGAGCTCAACATCTACATCCGCGGCTGCAGGGAAGCTCTAGTCAACTACTACATGGGCCTGATGAACACTATTGGTGCTGGGgtcctgtctgtcttcctgctgCAGTCATCTGTGCTGGTAAGTCTGCGATACCTGCAGACAACCATGGAAGCGTTGGCAGGGCAGGAGAACACTGAGATTGAGACTGAGGGCTACCTGCTGGAGAAAGGGGTGAAGGAGACGATCATGGAGTATGTGACTCCTGTACTGGTTTTCCTTCAGCTGAACCAGGTGGGCAGTGAAGACACTGAAGCTTAGGCGACCCCCGCCAGATAAAGTGGAGAAATCTAAATGTTTCAGACAGGGTGGTGTAGGGGACAAACGTGGCATTTTATTGGGTGATAAATAATCTAACTAGACACTGATCAATTAATCTGGTATTTCTTTGACATCACAATCCATTTTAATGCTGATATTTTTCTGTGTTTAATGTTTTACCCCTAaatgcagtgtttcccaaactcggtcctggggaccccaaggggtgcacgttttgatttttgccctagcacttcacagctgattcaaataatgaactcattatcaagctttgattatttgaattagCTGTGGAGTGCTAGGGCAAAGAGTTTGAGAAATTCTGCCTAAACGAGTGACACGAATGTTGTAATCTATTTCAGTCACCTGAGGGCTAATATATTTTTGTATCAGTTGTCCGGGGACAATGCACCCCAGTCTTAGGTATCcatgactgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaaaaatagagGCACACATTAATCACATTAACCTCATCCCAAACCCAAGCCCTCCACAATTATCCATGATTAAATTGGGTTTTTGATGTTTAATCAATTACATATACTCCCCAAAGGAGAAATAAAAAACACATTATTGTAATTTTGTATTTTATAACTCGGGGTTGCTATGCATGGTTATTTCCACCTCACCAATGCAGTGTTCTCTCAGTTAATACCACAACAATATTATGGTTGACACTTAACAATGCAAAGATATCTCCAATTACTAAGGGATAGAATTAtatgaacattttacattttggggaatattttaAAAAGCACATGTTACATTTTGAGTAAAAGACTAACAGCAATGTAAAGCTGACTGTAGAAAGATTCAATGCTCTGCTATGTAACCCTCAGCAATATGACAAACACAGCACTTTATTACAGAGCTATTATGACAGAGAATTATT

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484229 lncRNA upstream 2994 29969184 ~ 29970572 (+) False G2173603
TU2484230 lncRNA upstream 2994 29969975 ~ 29970572 (+) True G2173603
TU2484178 lncRNA upstream 81142 29891987 ~ 29892424 (+) True G2173553
TU2484206 lncRNA upstream 93331 29879952 ~ 29880235 (+) True G2173581
TU2484205 lncRNA upstream 94091 29879208 ~ 29879475 (+) True G2173580
TU2484247 lncRNA downstream 5733 29983324 ~ 29995153 (+) True G2173614
TU2484244 lncRNA downstream 22169 29999760 ~ 30000561 (+) True G2173611
TU2484241 lncRNA downstream 28472 30006063 ~ 30007457 (+) True LOC110509999
TU2484254 lncRNA downstream 33659 30011250 ~ 30011476 (+) True G2173621
TU2484255 lncRNA downstream 35422 30013013 ~ 30054351 (+) True G2173622
XM_021591258.2 mRNA upstream 17373 29952492 ~ 29956193 (+) False LOC110509998
XM_021591256.2 mRNA upstream 32581 29940307 ~ 29940985 (+) True LOC110509996
XM_021591252.2 mRNA upstream 47889 29914857 ~ 29925677 (+) False LOC110509993
XM_036967421.1 mRNA upstream 47889 29915152 ~ 29925677 (+) False LOC110509993
XM_036967422.1 mRNA upstream 47889 29920501 ~ 29925677 (+) True LOC110509993
XM_036967378.1 mRNA downstream 883 29978474 ~ 30007461 (+) False LOC110509999
XM_021591260.2 mRNA downstream 72597 30050188 ~ 30107501 (+) False LOC110510000
XM_021591264.2 mRNA downstream 142926 30120517 ~ 30127527 (+) True LOC110510005
XM_021591261.2 mRNA downstream 151927 30129518 ~ 30135940 (+) True LOC110510002
XM_021591263.2 mRNA downstream 161752 30139343 ~ 30147325 (+) True LOC110510004
TU2484191 other upstream 19756 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 77287 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 102249 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 311332 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 386094 29585594 ~ 29587472 (+) False G2173114
TU2484310 other downstream 159132 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 342057 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 359261 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 486351 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 845023 30822614 ~ 30824144 (+) True LOC110510022

Expression Profile