RNA id: TCONS_00055948


Basic Information

Item Value
RNA id TCONS_00055948
length 5096
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_028899
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32429579 ~ 32646394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taacatttattaatgtagagttaatgcttaacaaataatgaatttactagatgctaatgcttagtaaatgattcatagtgtgtagttattataaagtgttacccgaTGTTTTGGTTAAATGTTGTTCTTCTCGTTTCTTTaatcatagaatcttgagagtaaaatgatcagatttctaaagaatgaactggagaaatttaagaaaatcttacaagcagaaaacagtcaagagtttgtaaaggagtttaatgagaacagaagcagaatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgacactctccaggacGAGCTGTTCTTCATTAAGCAGCTTAAAAatagcctgaagaagaaatatcaaagtgtgtttgaaggaattgctcaccaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtaCTCAGTCACTAGAGATtcaggttgaatgcaaacatttgtttgtagcagctgaacaagacgagcggatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggagaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtggtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcggctgccagtaagattcctgctgactgtatcgaccggctgacagacATACGAGGATttaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactaaaactgaaacacagggctcatgctgagacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcacatgtctcctgggatccaaagctcatcctttcactggggaaactggccttccagcagctggaaagaaacaatgtgatcttctatgagagcgatctgaaagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggacacgggaatcattcttggtaccatgtactgtttttttcacttgagcattcaggagttcattgcagccctttatcatCATCTGATTCTAGACAGTGACAAGACACAAGCAGAAAAAAGCAGAAATGTGTCCATGATTGATTTgctgaagactgcagtggacaaggctctggaaagtgagaatggacatctggatcTTTATCTTCGCTTCCTTCTTGGTCTGTCACTCCAGTCTAATCGACAgctcttacgaggcctgttgacacagcaagatgacagagaccagagcaaaaagaaaataattgcctacatcaagcagaaacttgaagagaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaatgaCCAAACTCTggtgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctgacctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaatcctccaaaagagctctactacagaGCTGTAAActtactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgagattggtcatgtgttatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtatcaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacaaggattacagcaggactgcacaaatgtaggactacacacacacactctctctctttcacacaaacagtctctctcacatacacacacacacacacactcactcacacagacacacacacacgtacatagactttctctctctcacacacacacacacacacatcctctctcatacacacattcacatacacacattctctctctcacacacacactcacacacacatcctctgtcaaacacacacacagatattctctctctctctttctctcacacacacacacactcatacactatctcacacagacagacacacatgctcacacaaacacatacatacacatacacgcacacaaaggcgcgcacacacacacacactcacttacaaaaatgtcctgtggtatttcagcagtacaacataaatttaccacacaaaaattgagcaaagctaaatatgacaggattactacagcactttctgcagtacaatatcacaagaattagctttttttattctgtctttttctaaaaaaaaaaaattttctctcaaagtatgttctgcatttaagttGTTTAATTAAGAAACACCTATTCTTACAAAGTGacatcacatgtattcatatttattttaaaaacttttcagtgtgcaaatgtttcagtgtactggaataaatttgcaattgaaacagCAAGATGACTGACACCCcttacaaacattacctgcggtattctatgtggtaaaccatcaaatgtacaacACAAAAATTATGTGGAATAGAAATATTACAGACATATGACAGTAATACCACACactctaccacaagaatatcacatgaatattacatattgtataacagaatcctgtggtaaatactaccaaAACATGAAAGTGATACCaaaagaatactacaggagtattacataatGTACAGCACAGAATCTTGTGGTAAAatgtcccaaaaaacaacaaagtactacacagttaccacataaTTTTTGTGTTGTACATTTAAAGGTTTACCACATAAAATATCGCAGGTAATTTTTGTAAggacacaaacactcacacacacgcacacacacacacatcttacatacacacgcacgcacacacacatacacatatacacacacacacacaaacaaactcattcacatacacacacacagacattctctctcacacacatatacgcacacgcacacacacaaaaaacagacacacatgaaagcgcacacactctctctctctctctctctctctcacacacacacacacgcacacacctgtggttataattgtgtgtgttcttgtgttcagatgtctgtttcctcaccctggatccaaacacagcacacactcgtctcattctgtctgaggagaacagagaggtgaagagtgtgagtgAGAATCAGCCgcatcctgatcatccagacagatttgattatgatcctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatgatcGTGTGtctatatcagtgtcatataagagcatcaggaggaagagaAGAGGTGATGAGTGTTGGTTTGGacataatgctcagtcctggagtttgatctgtgaatcctccagtttctcattcagacacaataatacacgcactgatctcccagtagatccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttactgtttattctggatcatcggtgaaactgagctgaagactgacccagaatcctctgcaggagcagtcagcagcagtgatGATCTGGAGTCTCttctgtgggtgtgtgtgtgagagagagagattgtgtctgtgtgtgagtaaAAAAGAGATCTGTGTGTGCGTATGTTCACTGCTCTGTGTCTATattacaagtgtgtgtgtttgtgtgtgtgagagagagtgtgtctgtgtttgtgtgtgtgatgatctGCTTGAAGCACAAAAATGTCCTAAAATGTGTGCAAAGCTGAAAGTTATGAACTGAAGGCTTCTCGCCAGCGTGATCATTATAAATGATGATTATTCAAGAGTAATATTCTGAGTTCAACACTTCTTCATGATCACATGACTCATCTCACATGTCTGTGCTGACTAAGATTGCATTTGCTCCTAAAATATCATCAAATAAACCACTTTGTTCCTCCCACATCTGTGTTGTTTTGAGGtttctgtgtgtttctgtgtccATAAGATGTATTGAGTTGATAAATGttgtatttgtgtaaatatttcaTGATTTGTGTTCATCCCTCAGCTTGTTTCCTCTATAAATGATGCACTTTTGCTTTAAATGACATCAGAAGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000193974

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055936 lncRNA downstream 387039 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055934 lncRNA downstream 436337 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055935 lncRNA downstream 436337 31991784 ~ 31993242 (-) True XLOC_028891
TCONS_00058249 lncRNA downstream 437433 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00058248 lncRNA downstream 469471 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00055958 lncRNA upstream 74173 32716854 ~ 32717980 (-) False XLOC_028901
TCONS_00058251 lncRNA upstream 74637 32717318 ~ 32718201 (-) True XLOC_028901
TCONS_00058252 lncRNA upstream 115515 32758196 ~ 32897133 (-) True XLOC_028902
TCONS_00058253 lncRNA upstream 485334 33128015 ~ 33135638 (-) True XLOC_028905
TCONS_00058254 lncRNA upstream 774867 33417548 ~ 33419586 (-) False XLOC_028912
TCONS_00055941 mRNA downstream 236711 32191378 ~ 32192868 (-) True XLOC_028896
TCONS_00055939 mRNA downstream 249424 32175332 ~ 32180155 (-) False XLOC_028895
TCONS_00055938 mRNA downstream 249880 32174137 ~ 32179699 (-) False XLOC_028895
TCONS_00055940 mRNA downstream 249880 32176095 ~ 32179699 (-) True XLOC_028895
TCONS_00055937 mRNA downstream 332174 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055959 mRNA upstream 182169 32824850 ~ 32888436 (-) True XLOC_028903
TCONS_00055960 mRNA upstream 415163 33057844 ~ 33073382 (-) False XLOC_028904
TCONS_00055961 mRNA upstream 422007 33064688 ~ 33071267 (-) True XLOC_028904
TCONS_00055962 mRNA upstream 536673 33179354 ~ 33180531 (-) False XLOC_028906
TCONS_00055963 mRNA upstream 536686 33179367 ~ 33189070 (-) True XLOC_028906
TCONS_00055943 other downstream 171849 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055942 other downstream 173144 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055912 other downstream 1201952 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 1204929 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 1205985 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055966 other upstream 747541 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 749094 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 1324236 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055976 other upstream 1325529 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055986 other upstream 1910386 34553067 ~ 34589087 (-) False XLOC_028925

Expression Profile

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