RNA id: TCONS_00055951


Basic Information

Item Value
RNA id TCONS_00055951
length 711
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_028899
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32429579 ~ 32646394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttcagcatttgagctgacaAGAGAAACTTCTTcatcaggtcaggaatagggttggggattgaagatggattcagattctggaatcagacacttggattaatgttcagactcttgttctaaaatcaacatctggattcctcttctctgtgcacacatgtgtatttttcacttgctaatctgtcaggaacttgggcgctggcgagcagctttaataatctgaacatagtttagagatggactgcaacatgtgctcaaaggctgcatgtgctgaagaacgatggcaaagctaagtgtgatcactgtaataaatgaatgttgcagcagggtgtctccatcaacatgagcagtatctgcgctcgcttcaccaacagcagaggaaaagaacgcactgtgttacattcattgtgcatcccggctcaagcaacaagtgttgtgtgttttagatcaagagtttggagcgtgtagctgagcagctcagtgctagctttagcttattagctgagggggaaactaaacagctcattctctccatctgtgtgtgtttacagtctggatcatggaggacacacaaggattacagcaggactgcacaaatatgtctgtttcctcaccctggatccaaacacagcacacactcgtctcattctgtctgaggagaacagagaggtgaagagtgtgagtgAGAATCAGCCgcatcctgatcatccaga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000151889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055936 lncRNA downstream 388042 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055934 lncRNA downstream 437340 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055935 lncRNA downstream 437340 31991784 ~ 31993242 (-) True XLOC_028891
TCONS_00058249 lncRNA downstream 438436 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00058248 lncRNA downstream 470474 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00055952 lncRNA upstream 134 32432723 ~ 32456694 (-) False XLOC_028899
TCONS_00058250 lncRNA upstream 33616 32466205 ~ 32467230 (-) False XLOC_028899
TCONS_00055958 lncRNA upstream 284265 32716854 ~ 32717980 (-) False XLOC_028901
TCONS_00058251 lncRNA upstream 284729 32717318 ~ 32718201 (-) True XLOC_028901
TCONS_00058252 lncRNA upstream 325607 32758196 ~ 32897133 (-) True XLOC_028902
TCONS_00055941 mRNA downstream 237714 32191378 ~ 32192868 (-) True XLOC_028896
TCONS_00055939 mRNA downstream 250427 32175332 ~ 32180155 (-) False XLOC_028895
TCONS_00055938 mRNA downstream 250883 32174137 ~ 32179699 (-) False XLOC_028895
TCONS_00055940 mRNA downstream 250883 32176095 ~ 32179699 (-) True XLOC_028895
TCONS_00055937 mRNA downstream 333177 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055953 mRNA upstream 17820 32450409 ~ 32456788 (-) False XLOC_028899
TCONS_00055954 mRNA upstream 25404 32457993 ~ 32466799 (-) False XLOC_028899
TCONS_00055955 mRNA upstream 35265 32467854 ~ 32471434 (-) False XLOC_028900
TCONS_00055956 mRNA upstream 36051 32468640 ~ 32471499 (-) True XLOC_028900
TCONS_00055957 mRNA upstream 178963 32611552 ~ 32646394 (-) True XLOC_028899
TCONS_00055943 other downstream 172852 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055942 other downstream 174147 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055912 other downstream 1202955 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 1205932 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 1206988 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055966 other upstream 957633 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 959186 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 1534328 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055976 other upstream 1535621 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055986 other upstream 2120478 34553067 ~ 34589087 (-) False XLOC_028925

Expression Profile

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