RNA id: TCONS_00058250


Basic Information

Item Value
RNA id TCONS_00058250
length 1026
lncRNA type sense_over
GC content 0.38
exon number 1
gene id XLOC_028899
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32429579 ~ 32646394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAActagaagaagaagaggaggaggttATCCAGGTATGTGTTTGTTCTGTCTTCTCTGTGTCCAGTGTTTATACTGCTTCAGGAAAATTTACCCTAGTAAAATGTAACTCCACAGGTGCTTTGATAACCCTGCAGCTGTTTGACTCTTCTTTGCTCTGTTTAGAGAGTTTGTGACGGATGTTTTTCACTGAACTCCTGATCTGCCGCTCCTTTagaaacgaaagtgaaagtgtttAGTTGCTGTGTCGCCATTTTAAACATACATAATCCACTATTTACAACGCAGAACAGCTTTAAATCTTTGATGTCTTGACAAAACCTGTAAGCTTTTTGTGAATCTGTATGTAAGATTATATTTTATTCCTGATCAAACGGATGAGGCTGTGATTCTTCATTAGTTTAGTCGTGATGAGCTTCTGGATTTGAGTGTCTCAGCTGCTGATCTATTCCTGCATTCAGATGAATTATGAAGGCTGATCAATGACTGGAGATCTGTTACTGTTCATCAGTTTCTTCTAGAGTTTCTGCTGGAGATCAAACTCTTCAGGTTCATCATGGAGGATACACACACACCTGGAGATCTGGATTTGTCAGCAGGATGCAGGTATTAGACCTTCACTTGACATttcatatgattattttctacaggatATTATATTTACTCTCTGTTAGTTGTGTTTTTAATCTGTCTGAATATTTAACACACACAGCCAGCAAGATTGAGTAAAATCATCATGAAAAGTATCAGGAAGTGCTGttttaacagtgttttaatgatgaaatgttaagtaaatctgctgtgttgactccagtgtgtgcagcgctcaactttaatcttctctgttttagttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgaccgGTCTATGCACCCACCAATACATTTTAAGAGTGGAAACACAggacctgctgtcaggtagatcatctctttaatatctgcaactgatgagtattttcataataaatgaatcaggtaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055952 lncRNA downstream 9511 32432723 ~ 32456694 (-) False XLOC_028899
TCONS_00055951 lncRNA downstream 33616 32430582 ~ 32432589 (-) False XLOC_028899
TCONS_00055936 lncRNA downstream 423665 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055934 lncRNA downstream 472963 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055935 lncRNA downstream 472963 31991784 ~ 31993242 (-) True XLOC_028891
TCONS_00055958 lncRNA upstream 249624 32716854 ~ 32717980 (-) False XLOC_028901
TCONS_00058251 lncRNA upstream 250088 32717318 ~ 32718201 (-) True XLOC_028901
TCONS_00058252 lncRNA upstream 290966 32758196 ~ 32897133 (-) True XLOC_028902
TCONS_00058253 lncRNA upstream 660785 33128015 ~ 33135638 (-) True XLOC_028905
TCONS_00058254 lncRNA upstream 950318 33417548 ~ 33419586 (-) False XLOC_028912
TCONS_00055949 mRNA downstream 7663 32430116 ~ 32458542 (-) False XLOC_028899
TCONS_00055944 mRNA downstream 7878 32429579 ~ 32458327 (-) False XLOC_028899
TCONS_00055953 mRNA downstream 9417 32450409 ~ 32456788 (-) False XLOC_028899
TCONS_00055941 mRNA downstream 273337 32191378 ~ 32192868 (-) True XLOC_028896
TCONS_00055939 mRNA downstream 286050 32175332 ~ 32180155 (-) False XLOC_028895
TCONS_00055955 mRNA upstream 624 32467854 ~ 32471434 (-) False XLOC_028900
TCONS_00055956 mRNA upstream 1410 32468640 ~ 32471499 (-) True XLOC_028900
TCONS_00055957 mRNA upstream 144322 32611552 ~ 32646394 (-) True XLOC_028899
TCONS_00055959 mRNA upstream 357620 32824850 ~ 32888436 (-) True XLOC_028903
TCONS_00055960 mRNA upstream 590614 33057844 ~ 33073382 (-) False XLOC_028904
TCONS_00055943 other downstream 208475 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055942 other downstream 209770 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055912 other downstream 1238578 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 1241555 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 1242611 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055966 other upstream 922992 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 924545 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 1499687 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055976 other upstream 1500980 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055986 other upstream 2085837 34553067 ~ 34589087 (-) False XLOC_028925

Expression Profile

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