RNA id: XM_021591309.2


Basic Information

Item Value
RNA id XM_021591309.2
length 2764
RNA type mRNA
GC content 0.43
exon number 17
gene id xrra1
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31673347 ~ 31688712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTGACGTGTTGCTAGGATACCGGAGTCTTGACTGATTGGATGTTTATCCATGTACGCACATCatgaaaaatgtgtttgttttttatgtcTGGCTGGTAAATTAACAGTTATGGTAAAATAGGTCAATTTGGGCTGTAAATTGTGTAAATAATCTGGATAGCGCTCAACAAAAAGGTACTTGCTGTAGATGTAACAGTGGACGTTAATGGCTGCAGCCGGACTCTACAAATTAGATGTGGGAGACAGTTACCCCGCCAATTGTTTTCCCATCCGACCATTGTTTCATCAACGAAAAAACGGGGCTGGTCACTGGCTGGTTGCTCACCGAAATGCAGTGGAacataaatacaaaaatacacgAACTAAGAAATCAGAGGGAAACAGTTTTGCCTCAAACTCAATTGTGTCTGAGTGCACACGGGTTGAAGAGTGTGCGACATCAGATATTCCTGGCTACACATTGGATGCTCCTCTCCTGTTGTCATTGCATTGTGTGGACAAGCCATCTGACCTGTGCTCTGTTGACATCAGTGAGCAGAGATTGAATTTGATCAATACAGAAGACTTCCTGGATTTTGAGAATGTTGCTTATGTCAACGCATCTGACAACAGTCTTACCATAGAGCCTTTTGGTAAATTCCCCTCCCTGAGGGAACTTGAGCTATCCTTGAATGGCCTCTGCAATGTGACACTCAATGCGGAAGACTTCCCTCACCTGGAGGTGTTGGATTTGTCTTACAACAATCTGTCTGGTGATGACATCATGTCCGTTGGTCTACTTCCCTGTCTGAAAGTCCTTCATCTCACCGGGAATCAACTTCAGTTTCTTCCTCCCAACCTGGCAGCCCCTCCCCATGGCCCCTCACAACGCGCAAAGGATAATGGCATGCGATTTCAAACTCTTGAAGTGCTGATGCTAGATGACAATAAGCTGTCCTCTGGTGTCTTCAGCAGCCTTGCCAACCTGAAAAGGCTACAGCATTTAAACCTGCAAGGGAATCGTATCTCAGAGGTACCAGAGGTGTTGCCGAGGAACCTGCAACAGAAGGGATATCTGCAACACCAGCAGGTGTTTCACAAACAAAATTGTGACCTACAGGACCTCAGGAATCACCGTTTCTTTGAGGGGTTAGAGACTGAATACATGAATGCCGTCTCCGGTGTTCCGGAAAACCAGCATGAACATATCAAGAACAGTTCAGAGGATGAGTGTGGTCAATCCAAAAACGATTCCCCCATTCGCATATCCCTTGACACTGAGGAATTTTCTGGAGCATACGGTTTGCCACTACCAGAGCTTTGTTTCCTCAATCTGGCTGACAATAAGATTGTTGAGGAAGAAGCACTGTTGTCTGTGGCCCTGTTTCCTATGCTCAGTGAGATTGTTATTCACTCCAACCCACTGACCACACAGAGAAGTGGTGACCCACCACTTCTGACATACTTTCTCCAGGAAAGGTTGGGTATTAGAATTAGGCGCAAAAAGACATCAGAAGTTGTGAAGCCCCCTTTGATATTATGTATTGACTCAAAACGAAAGgtaaaaaacaaaatcccaaaggTAACAAAGGTGCCTTTATTGATTCTCCTTGAAGAACCTTCTAGTCCTGCCTTACTTGATCCTGGCTCTCTGGAGGAGAAGCATGTTGAAGATCACTGTACGAATCCTCTCTCAGTAGAGAGAAAGTCAACAGAAAAGTCTGGCTGCTCCTCACACGCAATGGATGAGGAAAATAAACAGGAATCCATGGGAACTGCTCATAGAGTCGAGGCCATAGAGGATGCAATAGAATCATCAGATGATACCTTCCAACATGGAGAGTCATTCTTTGTGACGCAGGTGACAGATTTACATGATGAATCTGAATACCATCTGCTATCTGACGAGACAGAAGAAGTCAAAGAGATTCAGGAGAAAAATGAGTCAAATGCAATTCCAGGAAAATTCAGAGGCTTTGAATTGCTATTGGATGCCAAACCAGATCCAGACATGGTGGAGCCTGTTGGACTACAACACACTGTGAGAATGTTGGAACAAAAACTCAAGAATCTCCTAGTTTACAGAGATTCCAAACCTAACCTTGATTGCCTGCAGAAGCCATatgaagagaaggagaaaaggATTGGAAATCTACCATCTCTGAGACCAAGAaagcagagaggagaaagagttgAAGAGATGCTCATACAAATAAACGAGAGGAAAACAATCAGCGAAATCCCTCTAACTAACGTCTTAGAAGGCAAGGGCGTCTTCAAGGATGAGTATGAAGAGGCTTTGACTTTGCTGAGGGATATGAAGAAAAGGTACAAGATGGTTCACATGAAGGCAGTGGAGCAAGCAACACATATTGAGTATGAGAGGACCACCAACCACAAGTAGAGATTCACAAACTCTGTTACTTTCATGAAACATGAACATTAAACAATCAACCAAACACTCTTCTTCCAATTTAGGTGAAGAGAATGATCAGCTACAAATTATTTCTGGGCTGAAGGGAAAACGTTCTTATTGAGTTTATTTAGCCCATCTATGACAACTGTTAATGTATAACATAATGTATATGTATAACATTATCATCATGCATTTGTTTGTCTTTCATTATTAAATAGCTCTGTTTCAACTTTATTCAACCTTGACAAGAAGGTGACAGTGGATCTTGCAAATGGAGACACTGTCACCCAGGCTCATGGCAGTTTTGTATTTCAGTGGGGTATCAATAAAATCTGTTTTAATAAAATAGTTGGTAAAACAATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486506 lncRNA downstream 13658 31657109 ~ 31659689 (-) True G2175459
TU2486486 lncRNA downstream 21148 31630753 ~ 31652199 (-) False G2175441
TU2486485 lncRNA downstream 21148 31650435 ~ 31652199 (-) True G2175441
TU2486498 lncRNA downstream 31210 31638999 ~ 31642137 (-) True G2175451
TU2486465 lncRNA downstream 66228 31604476 ~ 31607119 (-) True tnfsf13
TU2486446 lncRNA upstream 4684 31683649 ~ 31688677 (-) True G2175418
TU2486539 lncRNA upstream 28076 31707041 ~ 31707373 (-) True G2175489
TU2486541 lncRNA upstream 31844 31710809 ~ 31711045 (-) True G2175491
TU2486530 lncRNA upstream 41533 31720498 ~ 31797706 (-) True G2175480
TU2486526 lncRNA upstream 68808 31747773 ~ 31750415 (-) True G2175476
XM_021591302.2 mRNA downstream 59780 31610543 ~ 31613567 (-) True LOC110510028
XM_036967302.1 mRNA downstream 62937 31608260 ~ 31610410 (-) True LOC118945265
XM_021590213.2 mRNA downstream 66118 31604094 ~ 31607229 (-) False tnfsf13
NM_001124671.1 mRNA downstream 66233 31604575 ~ 31607114 (-) False tnfsf13
XR_005040343.1 mRNA downstream 113191 31558833 ~ 31560156 (-) True LOC118945266
LOC110510035 mRNA upstream 4679 31683644 ~ 31687101 (-) True LOC110510035
XM_021591314.2 mRNA upstream 48838 31727803 ~ 31731451 (-) False LOC110510037
XM_021590274.2 mRNA upstream 57748 31736713 ~ 31738259 (-) False LOC110509376
XM_036967887.1 mRNA upstream 57748 31736713 ~ 31738259 (-) False LOC110509376
XM_021591315.2 mRNA upstream 60937 31739902 ~ 31740562 (-) True LOC110510038
TU2486453 other downstream 158 31669334 ~ 31673189 (-) False G2175420
TU2486455 other downstream 158 31669334 ~ 31673189 (-) False G2175420
TU2486456 other downstream 158 31669334 ~ 31673189 (-) True G2175420
TU2486088 other downstream 152159 31520052 ~ 31521188 (-) True G2175135
TU2485795 other downstream 666912 31003755 ~ 31006435 (-) False G2174894
TU2486556 other upstream 42987 31721952 ~ 31726394 (-) True G2175503
TU2486552 other upstream 47572 31726537 ~ 31729294 (-) True LOC110510037
TU2486563 other upstream 57948 31736913 ~ 31738235 (-) True LOC110509376
TU2487131 other upstream 584318 32263283 ~ 32266089 (-) True G2175969
TU2487134 other upstream 605785 32284750 ~ 32285483 (-) True LOC110510065

Expression Profile