RNA id: TCONS_00055956


Basic Information

Item Value
RNA id TCONS_00055956
length 1232
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_028900
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32467854 ~ 32471499 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGACGTCATTAGGCTGCGCCGCTTCCGCGCTGCAGTTCAACTGGAGGAAGaataaagtgtccaaacacagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaatgaggggagaaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatggtattttgaaaaggggagacaaaaatagtttcacctgcactcagtgtggaaagagttttggaagtaAAGgctatcttaagattcacatgaggatccacactggagagaaactattcacatgccctcagtgtgggaagagttttggaagaaaaaggGAACTTAAGATTCACaggaggatccacactggagaaaaaccatacacatgcactcggtgtgggaagagttttagccaatcatcaaacttaaatcaacacatgaggatccacactggagagaaaccattcacgtgcactcagtgtggaaagagttttaaccgatcatcatcccttaatgaacacatgatgattcataccggagagaaaccattcacatgcactcagtgtgggaagagttttggaagaaatttcgatcttaagattcacatgatgattcacactggagagaacccATTCAGATGCACgcattgtgggaagagttttagccaatcatcataccttaatcaacacatgaggatccacactagagagaacctattcacatgcactcagtgtgggaagagtttccaccgatcatcatcccttaataatcACAAGacgatccacactagagagaaacccTTGCACCCAGTGTGGAAAAACCTTTAACAACTCATCACACCTTTATGAACACatgaggatccacactagagagaacccattcacatgcactcagtgtgggaagagtttcatctgctcatcatcccttaatctacacattatgagccacactggagagaaacttgCACTTAAGCAGCGGTCACAATGGACTTTTTCCCCCATggatttccattcatacgcacgggaatgtgtcagaccggaaaccaAGTTTGtgtgtcaagtttcgcagttcactgcattgcaaagttcaagcttggtgaactctgacctgcaaaatcgcatcacttgactg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDART00000183621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058250 lncRNA downstream 1410 32466205 ~ 32467230 (-) False XLOC_028899
TCONS_00055952 lncRNA downstream 11946 32432723 ~ 32456694 (-) False XLOC_028899
TCONS_00055951 lncRNA downstream 36051 32430582 ~ 32432589 (-) False XLOC_028899
TCONS_00055936 lncRNA downstream 426100 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055935 lncRNA downstream 475398 31991784 ~ 31993242 (-) True XLOC_028891
TCONS_00055958 lncRNA upstream 245355 32716854 ~ 32717980 (-) False XLOC_028901
TCONS_00058251 lncRNA upstream 245819 32717318 ~ 32718201 (-) True XLOC_028901
TCONS_00058252 lncRNA upstream 286697 32758196 ~ 32897133 (-) True XLOC_028902
TCONS_00058253 lncRNA upstream 656516 33128015 ~ 33135638 (-) True XLOC_028905
TCONS_00058254 lncRNA upstream 946049 33417548 ~ 33419586 (-) False XLOC_028912
TCONS_00055950 mRNA downstream 1841 32430116 ~ 32466799 (-) False XLOC_028899
TCONS_00055954 mRNA downstream 1841 32457993 ~ 32466799 (-) False XLOC_028899
TCONS_00055946 mRNA downstream 1964 32429579 ~ 32466676 (-) False XLOC_028899
TCONS_00055945 mRNA downstream 2191 32429579 ~ 32466449 (-) False XLOC_028899
TCONS_00055949 mRNA downstream 10098 32430116 ~ 32458542 (-) False XLOC_028899
TCONS_00055957 mRNA upstream 140053 32611552 ~ 32646394 (-) True XLOC_028899
TCONS_00055959 mRNA upstream 353351 32824850 ~ 32888436 (-) True XLOC_028903
TCONS_00055960 mRNA upstream 586345 33057844 ~ 33073382 (-) False XLOC_028904
TCONS_00055961 mRNA upstream 593189 33064688 ~ 33071267 (-) True XLOC_028904
TCONS_00055962 mRNA upstream 707855 33179354 ~ 33180531 (-) False XLOC_028906
TCONS_00055943 other downstream 210910 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055942 other downstream 212205 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055912 other downstream 1241013 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 1243990 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 1245046 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055966 other upstream 918723 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 920276 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 1495418 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055976 other upstream 1496711 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055986 other upstream 2081568 34553067 ~ 34589087 (-) False XLOC_028925

Expression Profile

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