RNA id: TU2486552


Basic Information

Item Value
RNA id TU2486552
length 2338
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC110510037
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31726537 ~ 31731451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTGTGGCGGCCAGCACCCTGTTGGAGGTGTTCATGCGAGATAACATCCTACTGGAGCTGCTCAGGGTGAGCCTAACCATCCTGCAAGGCTCCTGGTTCTTTCAGATTGGATTCGTGCTGTTCCCATTAAACGGAGTACAGTGGGATCTGAAGGCACACGATAACACCATGTTCGTCACCATGTGCTTCTGCTGGCATCTAGCTGTGGCCCTGCTGATCGTTGGCATCAACTACTGGATGGGCTGGTGCTGTGTACAAAGATGTGCAGGGAAGGGAGGTGACATAGAGATCGGGATGAGAAAGACATTCAGCTCCCAGAAGGCTCTGCTACAGGATTCCGATGAAGAGTAAGCAGATGGATCATGAAGtgtaacacaggaggttggtgactgGGGAGGACGGGTTAGTGGTAATGGTTGGAGCGGAATAGTATCAAATACACTACATCAACACACATGgaagtgtttgatgccattccattagctacgttccagccattattgagccgtcctcccctcaccagcttCCACTGGTGTGTTCAGTAGTAGATCACTGTTATTGTTTTCTCCCCAATAGTTTTTTTTGTCTGAAGTTTGGTTAACAGTTTTTTCCTGTTTGTATCAGTGCTAGcgtgtgtattttttattttgagtGATGATTTTCAATGAAATAATGAGGTGCAATAGCTGAGTTCAGATTAAGGCCAAATTAATTGCAAATAAAATTTACAAATGCATGTAATTCAAAGTATAAAAGCTCATTTATGATTGTCAAGATAAGTGAAATGTACTAGCATTCTTTTGAGGTTTCTTTCCTGAAGTGAAACATTAACACCGGACATTGTTACCTGACAGGGTTTCCTCTCCTCTTAAGACAGTTTAAACATTTGCTCATCCCGCCTGTGGCTATGGAGCAACGTACTTCCTTCCATCCTGGAAAAAACAGAATGTCTAATCGATTACCAAAgataatacactgaacaaaaatagaaacaaaacatgtaaagtgttgatcctatgTTTCCAATCTgaatgtgtggcatatcaagaagctgattaaacagcatgatcattatacaggtgcaccttctgctggggacaataaaaggccactttaaaatgtgcagttttgtcacacaacacaatgccacagatgtctcatgttttgaggcaAGGTGCAATTGGCATTCTAACTGCAGGATTGTCCAACAGAGCTGTCGCCAgataatttaattttaatttctctaccagAATCCGCCTccaaagtcattttagagaatttgtcagtacgtccaactggcctcacagaCCACGTGCATGGAGTCgcgtgggcgagcggtttgctgatgtcaaccttgttaacagagtgctccatggtggtggtggggttatggtatgggcaggcataagctattgacaacaaacacatttgtattttatcgatggcaatctgaatgcagagataccgtgatgagatcctgaggcccattgtcgtgtcattcatccgcaaccatcacctcatgtttcagcatgataatgcacggccccatgtcacaaggatttgtacacagttcctggaagctgaaaatatcccagttcctCCTTGGCCTGAATACTCAccagatgctctggatcgacatgtatgacagcgtgttccagttgccaccaatatccagcaactttgtgCAGCCAtttttcttatttatttaactaggcattgCAGAGGAGTGGGAGGAATATTCCACAAgccccaatcaacagcctgatcaactaagGAGAACATTACCTGCCCCaattcatagtgccaactgtaaagtttggtggaggaggaataatggtctggggctgtttttcatggttcttgtggcaacagtttggtgaagtcactttcctgtttcagcatgacaatgctgccgtgcacaaagtgagatccatacagaaatggtttgtcgagattggtttGGAAGaacctgactggcctgcacagagcactgaccttaaccccatcgaacacctttgggataaattggaacaccgactgcgagccaggcctaatcgcccaacatcagtgccagacctcactaatgctcttgtggctgaatggaagtcccctcagcaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttaaaggggggaccaactccatattaatgcccatgattttggaatgaggcgttcgacgagcagatgtccacatacactacatgaccaaaggtgtctgtgaccaacagtattcccagtcatgtgaaatacatagattagggctaatgaatttatttcagttgactgatttcctt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486541 lncRNA downstream 15492 31710809 ~ 31711045 (-) True G2175491
TU2486539 lncRNA downstream 19164 31707041 ~ 31707373 (-) True G2175489
TU2486446 lncRNA downstream 37860 31683649 ~ 31688677 (-) True G2175418
TU2486506 lncRNA downstream 66848 31657109 ~ 31659689 (-) True G2175459
TU2486485 lncRNA downstream 74338 31650435 ~ 31652199 (-) True G2175441
TU2486526 lncRNA upstream 18479 31747773 ~ 31750415 (-) True G2175476
TU2486565 lncRNA upstream 32736 31762030 ~ 31762658 (-) True G2175512
TU2486574 lncRNA upstream 76999 31806293 ~ 31806703 (-) True G2175520
TU2486573 lncRNA upstream 78170 31807464 ~ 31807891 (-) True G2175519
TU2486575 lncRNA upstream 79736 31809030 ~ 31809693 (-) True G2175521
XM_036967836.1 mRNA downstream 37825 31673347 ~ 31688712 (-) True xrra1
XM_036967835.1 mRNA downstream 37828 31673347 ~ 31688709 (-) False xrra1
LOC110510035 mRNA downstream 39436 31683644 ~ 31687101 (-) True LOC110510035
XM_021591309.2 mRNA downstream 47572 31673347 ~ 31678965 (-) False xrra1
XM_021591302.2 mRNA downstream 112970 31610543 ~ 31613567 (-) True LOC110510028
XM_021590274.2 mRNA upstream 7419 31736713 ~ 31738259 (-) False LOC110509376
XM_036967887.1 mRNA upstream 7419 31736713 ~ 31738259 (-) False LOC110509376
XM_021591315.2 mRNA upstream 10608 31739902 ~ 31740562 (-) True LOC110510038
XM_021591317.2 mRNA upstream 18456 31747750 ~ 31750431 (-) True selenow1
XM_036967487.1 mRNA upstream 18456 31747750 ~ 31755799 (-) False ehd2a
TU2486556 other downstream 143 31721952 ~ 31726394 (-) True G2175503
TU2486443 other downstream 39535 31602449 ~ 31687002 (-) False G2175418
TU2486453 other downstream 53348 31669334 ~ 31673189 (-) False G2175420
TU2486455 other downstream 53348 31669334 ~ 31673189 (-) False G2175420
TU2486456 other downstream 53348 31669334 ~ 31673189 (-) True G2175420
TU2486563 other upstream 7619 31736913 ~ 31738235 (-) True LOC110509376
TU2487131 other upstream 533989 32263283 ~ 32266089 (-) True G2175969
TU2487134 other upstream 555456 32284750 ~ 32285483 (-) True LOC110510065
TU2487112 other upstream 702216 32431510 ~ 32433641 (-) False cpi1
TU2487117 other upstream 702359 32431653 ~ 32433641 (-) False cpi1

Expression Profile