RNA id: XM_021591319.2


Basic Information

Item Value
RNA id XM_021591319.2
length 1802
RNA type mRNA
GC content 0.51
exon number 8
gene id rsph4a
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31771899 ~ 31778015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAAGATCCTGCATGTCATTACATTTTTAAAGACTGTTAGGAGTGGAGGATATGCTGCGACTGGTGGACATTCTATGCGTGAAGTACCACAGCAACAGTATTGTTTACCCTAGAAACAGGCCGCTGGTAACGTGGACTTTCTGAAATATGGAGTCAGAGGGAGCACCACTGAACAATCAAAGGGAGCAGACATCGATCTGCTTCAAGGCATTTATGCTAAAAAATAGTACACAAAGTAACCTCAACCTCTATGACCATTTtgcacgggtactgaccaaggTGATGGATGAGCGCCCAGAAAATGTGGTTGACGTAATTGAAGACATGAGCCATGAGGTGAAGCGGGGATTGCTGCTGGACAAGCAGAGCACATTGAGAGACATACCTCCGTCGCCTGCTGCACAGCTCCTGGCTGAGCAGCAGATGTTGCTGTTTTCACGGGGAGGGGGTGATGATGGTGACCAAGAGGTAGAAACACCGCTCCCCAATGTGAGTGAAGTTGGCTTCTTACTGGAGCAGGCTGGAGTGGGACTGGGCAGAGAGGAGACGCTGAGGGTTTTCCTGGCACTCAAGCAGTTGGTAAATTCCCAACCACTAGCACGCTGCCGACTCTGGGGTAAAATCCTGGGCACTGAGGGCAACTATCTTGTTGCTGAGGGtgagtacagagatgaggaggAAGGGATTAATGAGGAAACAGCGGAAGACGCAGAAGGAGAACCTCGGAATGATGATGAGGAAGCTGAGGTGGTGGAAGTAATTGATACACTCCCAAGATCCACTTTCAAGCCGCCACCTGTGGTGCCAAAGGAGTACAACCGCACAGGTGTGAACAAATTCACTTACTTTGTGTGCAGAGAGTCTGGCCTTCGCTGGATGAGGCTGCCCACTGTCACTCCTACCCAGATTACAGCTGCGCGCCACATCCGCAAATTCTTCACAGGGAGACTGGATGCCCCCATTGTCAGCTATCCTCCTTTCCCTGGCAATGAGGCTAACTATTTGCGAGCCCAAATTGCTCGCATCTCTGCCGGcacacaggtcagtcccctcggGTTCTACCAGTTtgaagaggaggaaggtgaggaggaagaggagggagccCGGGACAGCTTTGAAGAGAATCCTGACTTTGAGGGTATTCCTGTTCCTGAAATGGCAGAATCTCTATCCACCTGGGTGCACCATGTCCAGCACATTCTCCAACAGGGTCGCTGTGTGTGGGTGAACCTGGCTGAGAAGCCTGAGGATGACTTTGAGGAGGAAGCAGATGAAGAGGTGAAGGAGGAGGCTGATGAGCCTGAGCCAGAGGTGGGCCCACCCCTCCTCACACCACTCTCTGAGGATGCAGAGattaccaccacccctccctggAGCTCCAAGATGTCCTCCACCCTCATCTCTCAGTTTGCTATTGCAGTGCTACGCTCCAACCTCTGGCCAGGGGCTTATGCTTATGCCAGTGGAAAGAAGTTTGAGAACATATACCTTGGCTGGGGCTTAAAATTTGCAGGGGAAGCCTACACCCCAACTTTTCCAACAATGCCCCAGCGAGAATACACCAGCGGGCCAGAGATTACAGAGGCCCTGGACCCCAGTCTGGAGGAAGAGCAGGCCCTGAAAGCAGCCATGGAGGAGCAGAAGGCTAACCAAGATGAGACAGAGGGCCTGGgtggagatgaagaggaggatgatgattGAGGAAGACTTTGTAGGAAACAGACACTACATTACAAAATTGAATGTTGACTAAAGCCATAATTTGTCAAGAAAGCACAAATTAAACAATTCGCAGAGCAA

Function

GO: NA

KEGG:

id description
K19756 RSPH4_6; radial spoke head protein 4/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486565 lncRNA downstream 9241 31762030 ~ 31762658 (-) True G2175512
TU2486526 lncRNA downstream 21484 31747773 ~ 31750415 (-) True G2175476
TU2486541 lncRNA downstream 60854 31710809 ~ 31711045 (-) True G2175491
TU2486539 lncRNA downstream 64526 31707041 ~ 31707373 (-) True G2175489
TU2486446 lncRNA downstream 83222 31683649 ~ 31688677 (-) True G2175418
TU2486574 lncRNA upstream 28278 31806293 ~ 31806703 (-) True G2175520
TU2486573 lncRNA upstream 29449 31807464 ~ 31807891 (-) True G2175519
TU2486575 lncRNA upstream 31015 31809030 ~ 31809693 (-) True G2175521
TU2486576 lncRNA upstream 33082 31811097 ~ 31811336 (-) True G2175522
TU2486578 lncRNA upstream 35547 31813562 ~ 31813776 (-) True G2175524
XM_021591318.2 mRNA downstream 10632 31757328 ~ 31761267 (-) True si:dkeyp-117b8.4
XM_036967487.1 mRNA downstream 16100 31747750 ~ 31755799 (-) False ehd2a
XM_036967488.1 mRNA downstream 16100 31747750 ~ 31755799 (-) True ehd2a
XM_021591317.2 mRNA downstream 21468 31747750 ~ 31750431 (-) True selenow1
XM_021591315.2 mRNA downstream 31337 31739902 ~ 31740562 (-) True LOC110510038
XM_021591324.2 mRNA upstream 130 31778145 ~ 31789440 (-) False sympk
XM_021591323.2 mRNA upstream 130 31778145 ~ 31789447 (-) True sympk
LOC110509423 mRNA upstream 132055 31910070 ~ 31914335 (-) True LOC110509423
XR_005040517.1 mRNA upstream 136610 31914625 ~ 31920308 (-) True LOC118945354
XR_005040518.1 mRNA upstream 142405 31920420 ~ 31929067 (-) True LOC118945355
TU2486563 other downstream 33664 31736913 ~ 31738235 (-) True LOC110509376
TU2486552 other downstream 42605 31726537 ~ 31729294 (-) True LOC110510037
TU2486556 other downstream 45505 31721952 ~ 31726394 (-) True G2175503
TU2486455 other downstream 98710 31669334 ~ 31673189 (-) False G2175420
TU2487131 other upstream 485268 32263283 ~ 32266089 (-) True G2175969
TU2487134 other upstream 506735 32284750 ~ 32285483 (-) True LOC110510065
TU2487112 other upstream 653495 32431510 ~ 32433641 (-) False cpi1
TU2487117 other upstream 653638 32431653 ~ 32433641 (-) False cpi1
TU2487113 other upstream 653809 32431824 ~ 32433641 (-) False cpi1

Expression Profile