RNA id: TCONS_00058251


Basic Information

Item Value
RNA id TCONS_00058251
length 884
lncRNA type intronic
GC content 0.35
exon number 1
gene id XLOC_028901
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32716854 ~ 32718201 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGGACATCGATTCAGTCCACATCAGGGGGAGCATCCAGCAATTCCAGCAGGACATACAGAAGATCAggtagttgctgtttttttgttttggatttattatgattattactaatattattattattattcatacacTTTCTTATTCCTTTACAGAAATTCTCTCCATTCCCTGGTTGACCAATGCAGTGAAGGTGGTTTTCAACAGAAGAGGCGGCGGTccctcagtccagaggttcatgaACAGATAGCAGCAGAagtgagtttttattttaatcaaaatgaaacaaTACAGTTTAATTTGTTGCAAGCACACTGGCTTGTTTATATGATACAATGACCAGGTCTTTTTCAAATAGGAGTCTTTAAGTGTCTCATTATAGAAGCATTATATAAAAATAGTTGATAAGAATTTTGAATCTAAGTGTTGTTGATTTATAAGCTGGGAATAGTGGGCTGTATAAAACTatgataaatgtaaatgcatttttatgaCTAGGTGATCTTCTTAAACGTATATACTCTTTAAACTATTATCTAAAATGATTTGTTATTCTTCAGTTTCTTCTAGTGGAGCTTGACATGTTTACTAAGAATGAATGTGTTTATGAGGTTTTGAGAAAGTATGAATTTAACCACTACAACTGGTCTGCCTTTATAACTCAACCTGGTTATTTTAATGTAGCAGTTGAAATTGACacataattacataatttttGTCTTTATCCTTTAGGTCTGTGATaccattctcacacacacactggagcgGTTCTCCTTCACAGACCACCTCGTTAGTGCCACATTGCTGCAGGCAGACAGGTTTGAGCAGTATACAGTAGCTTTTCCAGAAGATGCACTTAGCAGGACTCTGAAAGTCTATCCTGT

Function

GO:

id name namespace
GO:0070373 negative regulation of ERK1 and ERK2 cascade biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058250 lncRNA downstream 250088 32466205 ~ 32467230 (-) False XLOC_028899
TCONS_00055952 lncRNA downstream 260624 32432723 ~ 32456694 (-) False XLOC_028899
TCONS_00055951 lncRNA downstream 284729 32430582 ~ 32432589 (-) False XLOC_028899
TCONS_00055936 lncRNA downstream 674778 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055935 lncRNA downstream 724076 31991784 ~ 31993242 (-) True XLOC_028891
TCONS_00058252 lncRNA upstream 39995 32758196 ~ 32897133 (-) True XLOC_028902
TCONS_00058253 lncRNA upstream 409814 33128015 ~ 33135638 (-) True XLOC_028905
TCONS_00058254 lncRNA upstream 699347 33417548 ~ 33419586 (-) False XLOC_028912
TCONS_00058255 lncRNA upstream 699347 33417548 ~ 33446814 (-) True XLOC_028912
TCONS_00058256 lncRNA upstream 980525 33698726 ~ 33699784 (-) True XLOC_028914
TCONS_00055957 mRNA downstream 70924 32611552 ~ 32646394 (-) True XLOC_028899
TCONS_00055956 mRNA downstream 245819 32468640 ~ 32471499 (-) True XLOC_028900
TCONS_00055955 mRNA downstream 245884 32467854 ~ 32471434 (-) False XLOC_028900
TCONS_00055954 mRNA downstream 250519 32457993 ~ 32466799 (-) False XLOC_028899
TCONS_00055953 mRNA downstream 260530 32450409 ~ 32456788 (-) False XLOC_028899
TCONS_00055959 mRNA upstream 106649 32824850 ~ 32888436 (-) True XLOC_028903
TCONS_00055960 mRNA upstream 339643 33057844 ~ 33073382 (-) False XLOC_028904
TCONS_00055961 mRNA upstream 346487 33064688 ~ 33071267 (-) True XLOC_028904
TCONS_00055962 mRNA upstream 461153 33179354 ~ 33180531 (-) False XLOC_028906
TCONS_00055963 mRNA upstream 461166 33179367 ~ 33189070 (-) True XLOC_028906
TCONS_00055943 other downstream 459588 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055942 other downstream 460883 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055912 other downstream 1489691 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 1492668 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 1493724 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055966 other upstream 672021 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 673574 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 1248716 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055976 other upstream 1250009 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055986 other upstream 1834866 34553067 ~ 34589087 (-) False XLOC_028925

Expression Profile

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