RNA id: XM_036967893.1


Basic Information

Item Value
RNA id XM_036967893.1
length 2366
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110510054
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32021450 ~ 32037827 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGATTAGAGAGGAATTAACATCattcctttgtcattataggaATAAATTGATATTTGGTTTTAatcagagggaggggagagaggagagcagggagaaCAGGATGTGCCCTGAGTAGCATAGAAGCACGAGCCAGAGGGACTGGCACTAGGACACGGGCAGGCGAAAACACACGCTGGAGGAACATTTTGTGGCACTGGAGCTGATAGTTGGATGCCTGGATCAACGTGCAGCATGTAACAGAGGACGAGAGGGTTGTATAACACAGATCTCTCAGAGCTCTGCTTGTCCGCTGTGAGGTGGAATGGGTGCTGCTGGGATATGGATGGGCCACCGGACAGGGACAGTCGGGACGTCCCACTGACCTCCTGGAAGATCTCTGAGAGATAGACTCAGACGCATTGGAAATAATTCCTGGTTGCTCCAGCTCTTCCAGCCCCAGGCATGAACCTGGTGCTCCTGGCCTTCAGGCTGATGTGCCTGGCCTGGCTGTGGCCTGTCACACTGCTCAACGGCAGCCACCGACCCAACAAGAGGAGGCACAAGGACGTGTACCTTGGGGAGAACACCAAGAACCAACATGGAGGACGAATAGACTTTAAGATGAAAAAGTCTGACAGCACCAAGTCCCTGCTAATTAAATCTGAACAGCTGCTCCGTATAGAGGACCATGACTTTGCAATGCGGCCTGGCTTTGGAGGGGCAGCTATTCCTGTGGGCATTGACGTGCAGGTGGAGAGCATTGACAGTATATCTGAAGTCAACATGGACTTCACCATGACTCTGTACCTGAGACACTACTGGCAGGACGACCGGCTGGCCTTCCCTTCCAGCAGCAACAGGAGTCGGACATTTGACGCTCGGCTAGTGAAGAAGATCTGGGTGCCAGACGTGTTCTTTGTCCACTCCAAACGTTCCTTCATCCATGACACGACCATGGAGAACATCATGCTGAGGGTGTACCCTGACGGCAACATTCTCTACAGTGTCAGGATCACTGTGACTGCTCTTTGCGCCATGGACTTCAGTAGTTTCCCACTGGACACACAGAATTGCTCTCTGGAACTGGAGAGCTACGCATACAATGAGAATGACCTCATGCTCTACTGGAAGAACGGGAACGATTCATTAAGGACTGACGAGATCGTGCTCTCGCAGTTTTTTATTGAAGAATTTCACCCTTCCTTCGGGCTTGCCTTCTACAGCAGCACGGgtTGGTATAACAGGCTCTACATAAACTTCATCCTCAGGCGGCACATCTTCTTCTTCATGCTGCAGACCTATTTCCCCACCATGCTGATGGTGATGCTCTCCTGGGTGTCCTTCTGGATTGACAGGAGGGCTGTGCCCGCCCGGGTCTCTCTGGgcATCACCACAGTTCTGACCATGTCCACCATCATCACAGGCGTGTCAGCCTCCATGCCCCAGGTCTCTTATGTGAAAGCGGTAGACATCTATCTGTGGGCCAGCTTCCTGTTTGTCTTCCTGTCCGTCATCGAGTACGCCACCGTCAACTACTTCACCACAGTGGAGGAGATGAAGAAGCTCAAGGGGGGAAAGatccCTGCCAATTTCAATGCCACTCAAACTATGGCCTTTGACGGATGTTACCATGACAATGACATTGACCTGATGCCATTCCCAGAGCTGCCCAGCACCCCCAACACAGAGCGGAGTCGGACGGCCACGTTGAGGACCTCGAGGAACTCTGCTGCAGAGCCCCCGCCCACGGAGGGCACCAGGCTACGACGCAAAAAATCCATCAAACACAACCTCAGCTTCATCATGAGTAACAGCTACATGATCGACTCCTACTCCAGAGTCATCTTCCCCATGACCTACCTGCTGTTCAACATCATCTACTGGAGCTTGTACTCCAGTAGGTGAATAAACCGTCAACAGTCTACTAGCAGTTCATCATGCAGTGGGTTATTGGAGTATGTTGTCTAATGACTACTGaactatattactactgtatattatctattaGGTTATTCTCACTGACAACAGCATCATCGTCAAGGCGTTGTTTTCTGCCACCCACTGGATTATGACCTTAACCATTGGTGTCTACCAGAGTGCATTGTGGGAGTTTTGGACAGTCAAGCCCTACTGAAGAAGAGATACTATTGAGTAAATCTGCTTTTTATTGGAAACCTGTTGGAATCCGGGTTCAGGTGTGAAGTTGCTGGTGCTGTTCATGGAACTGCTTCTGCTGGAATGCACAGTTGCTTTCCCCCCCACTGGTTTAAACATTTAGTTACTGTATATAGTATGAATTTAAATATGCATGAAAATGAAGGTGCGTGTGTCTTTTATATCAGTGAATATCAGAAAAATACAACATCAGATTAgcttaaaataa

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486707 lncRNA downstream 28871 31991010 ~ 31992579 (-) False G2175644
TU2486708 lncRNA downstream 28871 31991010 ~ 31992579 (-) False G2175644
TU2486709 lncRNA downstream 28871 31991010 ~ 31992579 (-) True G2175644
TU2486714 lncRNA downstream 30805 31989016 ~ 31990645 (-) True G2175645
TU2486686 lncRNA downstream 50268 31970896 ~ 31971182 (-) True G2175630
TU2487024 lncRNA upstream 71814 32109641 ~ 32109877 (-) True G2175890
TU2487027 lncRNA upstream 73859 32111686 ~ 32111908 (-) True G2175893
TU2487036 lncRNA upstream 82679 32120506 ~ 32120943 (-) True G2175902
TU2487065 lncRNA upstream 113584 32151411 ~ 32153545 (-) True G2175921
TU2487054 lncRNA upstream 136238 32174065 ~ 32176861 (-) False G2175918
NM_001124596.1 mRNA downstream 62886 31956161 ~ 31958564 (-) True LOC100136606
NM_001124255.1 mRNA downstream 73756 31942742 ~ 31947694 (-) True LOC100135879
XR_005040518.1 mRNA downstream 92383 31920420 ~ 31929067 (-) True LOC118945355
XR_005040517.1 mRNA downstream 101142 31914625 ~ 31920308 (-) True LOC118945354
LOC110509423 mRNA downstream 107115 31910070 ~ 31914335 (-) True LOC110509423
XM_036967711.1 mRNA upstream 65381 32103208 ~ 32106558 (-) True LOC110509424
XM_036968075.1 mRNA upstream 165164 32202991 ~ 32212026 (-) False LOC110510059
XM_036968070.1 mRNA upstream 165164 32202991 ~ 32219464 (-) False LOC110510059
XM_036968072.1 mRNA upstream 165164 32202991 ~ 32219464 (-) False LOC110510059
XM_036968073.1 mRNA upstream 165164 32202991 ~ 32219464 (-) False LOC110510059
TU2486563 other downstream 283215 31736913 ~ 31738235 (-) True LOC110509376
TU2486552 other downstream 292156 31726537 ~ 31729294 (-) True LOC110510037
TU2486556 other downstream 295056 31721952 ~ 31726394 (-) True G2175503
TU2486455 other downstream 348261 31669334 ~ 31673189 (-) False G2175420
TU2487131 other upstream 225456 32263283 ~ 32266089 (-) True G2175969
TU2487134 other upstream 246923 32284750 ~ 32285483 (-) True LOC110510065
TU2487112 other upstream 393683 32431510 ~ 32433641 (-) False cpi1
TU2487117 other upstream 393826 32431653 ~ 32433641 (-) False cpi1
TU2487113 other upstream 393997 32431824 ~ 32433641 (-) False cpi1

Expression Profile