RNA id: XM_036967711.1


Basic Information

Item Value
RNA id XM_036967711.1
length 3259
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110509424
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32103208 ~ 32106558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCTCTGGCTGGCAGAAAGAACCAGATGAGCAGGAAAGGCAAAGTACAGAGCAGGGCTGTTACTTTCAGTTATATCGTGTTCACTGATTTATGAAATCTATAAAAAGGacttaaaaataatttaaaatcaAGATtcgaaacaacaacaactactactacaaaaCAACTGGGATCACTAACAGTATATAATTTTATTTGGACTTCACTGCTATAAGTTTCTAAAGGGAAAGTTAATCTTGATCTCGGAAGCCATTACAGAGGAGAGACTGGATTGATAACACCATGGCTTCGAAAGCTAAAGAGCTTCTCTCTTGGTCTGCAAGCTCTGTGGTAACTGGAGGAGGAATCACAGCTGCCAGGCTGTTACACATCATGAGGGACCAGACAGTGACTGTCATCATCATGGACAACCGTAGCTGCAGGGACTTTGAGGAGTCCCATATCTATATCCCCACACAGATCTGCATCAGCGTCCCTGAGGAGGCTATCAACCCTGGGATCACTGTGAACCAGATCAAGGCCAGGCTGCCGGAAGCATCcagagaacagtggaagagacagggGTTCGTAGACTACATCATATTACTGGACTGGTTCAGCTGTGTcactgacctcagactggggacccCACTCAAGAGCCTCAAAGATGCTCTCTACAAGTGGGACAGCACCACAGATCTCCACAGAGAGCCCCTGGTTCTGGAGGGAGGCTATGAGAACTGGTTGCTTGTCTACCCCATGTACACAACCAACGCCAAAGTCAGACCCCCCCGACAACACGCCCTCAACACCCTCCCTCAGCTGAACTTCTGCTACCCCTCTCTGAAGGAGCTGAAGGCTTCAGCCCCGCCTCTACCCgcccccctctccaccccccccccccccccccccccccgtgcccaAATACAAGCAGCCCCCCCAGCCCAACCTGTCCCTGCCGAGACCACTAAGCCCAGTCATGACGTGTATGCCAAGATGGAGATCGCCAAGCTGTCAGCAGCTAAGATCAGTAACCTACACCCTGTATATGGAGGGATGGGTGCCATGCTGACGGGACTGTGTGACAGAAGCACCTGTTACATGAACTGCATCCTGCAGTGCCTGTGTAACACCCCAGGCATGGCTGAGTACTTCACCAATAACTACTACCAGGAAGATATTAACAGGAACAATTACCTGGGCCATAAGGGGGAAGTAGTAGAGGAGTTTGGGGTGATAATGAAGGCTATGTGGTCTGGCCTGTATAAGTCTATCAGGCCCAGGGACTTTGAGTTTACCATTGGAAAGGTTTACGCAGGGTTTGCTGGCAATGAACCGCAAGATGCAAAGGAATTTATGCTTGTCCTCCTAGATGGGCTACACGAGGACCTCAATAAGGCTGACACTAGTAAACTGTACCAACGGGAAGTGAATGACCATCACCTGGATGACCAAAGGGCAGCCGACCTGGCCTGGAGCAGACACAAGCTGCGGAATGACTCCATCATCGTAGCTCTGTTCCATGGTCAGTTGAAGATCACTGTCCAGTGTCTCACCTGTCAACACAAGACACGCACCTTCGAAACCTTCAATCACCACAACCTGCCACTGGCTTCATCTAAAGAGTGCTCCCTACAAGACTGTCTGAAGCTGTTCAGTAGAGAGCAGAAGCTAGATAACCATTCCGCTGTGTTCTGCAGTCACTGCAAAGCCCTGAGAGACTCCATGAGGAAAGTGAAGATCTGGAAGGTCCCGCCCATCCTTGTGGTTTACTTAATTCGATTGACCATCGATGGCAGAAGGATTCAAGTTCTCCAGACCAACGTTGACTTCCCCCTGGAGAACCTGGACCTGAACCAGTGTGTCATTGGTCCAAAACAGAAGCTCAAGAAATACAACCTGTTTGCAGTCTCTAATTATTATGGGGTGGGTCTGAATTGTGGTTACTACACAGCCTTCTGTAAGAACGCCATCAAACAGCAGTGGTACAAGTTTGAAGACAAGGATGTTTCAGACATTTCCACCTCCTCAGTCAAGTCCTCTGCCGCCTGCATCTTATTCTACTCTTCTTTGTGAGGGGTGGAAGGACACACAGGGGattttgtacagtatgtgtgtgtgtgtgtgtgagatctggTCCAAAGCGTCCCCCAGAcagtggcgacctgtcattcagggtaGGTGGGgcagaatttttttttgttgttccctgttttgcatgttattttgacatTAATATGTGCCACATATCAGGTTGAAAACAATGTCATTCTCTTTTGCGTTCTTGAGTAAGGTAGCTCGAAAatgtgtttcagcctagcttagtgctttctgtggtggtggggcagccagtggaaaattCGGAGCGTAGGgattggtaatgttctctagttgtgtcgtgcatggctcagtgttctgtcactcatgggaacACTATGTCACCGCAAAATGTATGAgaagagctcgaaaattcaagcctctttggtgctgccatagagttacattagaagtgcccatccgagaaggctcaaggtcattgtcATATcaacagtagctttgattggactgatcttgtcaacatcatactttcaaaatcttagctagagTGAGGGCATTTTCTGTTAAACCTTATTAATGCTTTGGTACTAAAATATCCTTCTTTAAGCCTAGGCATTGGGCTcgagatttgtgtgtgtgcattagtaTAGGCCTGTTCTAACTGTTCTGTGTGTAGTATGACCCTATGATGTCTGGGAGCTCAGCcaagacctgacagaaactaacTGGTTCCTCTCAGCTTAACTGGAGGCAGAGCAAAGTGTTATATCCTGCATACCAGCGATAAGGCTGTTGATCTGTTTGGAGCCTGTTTCTGGGCGAAAGGTTcatgcttgtgtatgtgtgtaggggtAGGACCATACATTATCTGGGCCGACAGTCAAAGGTGCTTGCTTGCCCAACTTGGGGAACCGCTGAGCTGCTGTTAGAGGAAGTATGTCTGGAGTGACTTCCTGTCACCTTGGCACCTATTGTCCTCACTCAGTTGTGACAGAACGAGACAACCTTTTCATTATAGCCTGTACCCCGTAACCCAGTGTCGTctgtccccacacacacacatacacatacataagATCACGTGTTTTGCAGATGCTTGCATAAGATAGCTTGACTATATAAGGCTTCTGTACTCATTGTGCGTGGGCTCTCACTCCATTCACTTTGTGTGTTGTGTGAACAGCTCCCTTATTGCAATACGTTTATTAATAAAAGTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2486756 lncRNA downstream 68495 32034382 ~ 32034713 (-) True G2175664
TU2486755 lncRNA downstream 68894 32034009 ~ 32034314 (-) True G2175663
TU2486707 lncRNA downstream 110629 31991010 ~ 31992579 (-) False G2175644
TU2486708 lncRNA downstream 110629 31991010 ~ 31992579 (-) False G2175644
TU2486709 lncRNA downstream 110629 31991010 ~ 31992579 (-) True G2175644
TU2487024 lncRNA upstream 3083 32109641 ~ 32109877 (-) True G2175890
TU2487027 lncRNA upstream 5128 32111686 ~ 32111908 (-) True G2175893
TU2487036 lncRNA upstream 13948 32120506 ~ 32120943 (-) True G2175902
TU2487065 lncRNA upstream 44853 32151411 ~ 32153545 (-) True G2175921
TU2487054 lncRNA upstream 67507 32174065 ~ 32176861 (-) False G2175918
XM_036967893.1 mRNA downstream 65381 32021450 ~ 32037827 (-) True LOC110510054
NM_001124596.1 mRNA downstream 144644 31956161 ~ 31958564 (-) True LOC100136606
NM_001124255.1 mRNA downstream 155514 31942742 ~ 31947694 (-) True LOC100135879
XR_005040518.1 mRNA downstream 174141 31920420 ~ 31929067 (-) True LOC118945355
XR_005040517.1 mRNA downstream 182900 31914625 ~ 31920308 (-) True LOC118945354
XM_036968075.1 mRNA upstream 96433 32202991 ~ 32212026 (-) False LOC110510059
XM_036968070.1 mRNA upstream 96433 32202991 ~ 32219464 (-) False LOC110510059
XM_036968072.1 mRNA upstream 96433 32202991 ~ 32219464 (-) False LOC110510059
XM_036968073.1 mRNA upstream 96433 32202991 ~ 32219464 (-) False LOC110510059
XM_036968071.1 mRNA upstream 96433 32202991 ~ 32219471 (-) True LOC110510059
TU2486563 other downstream 364973 31736913 ~ 31738235 (-) True LOC110509376
TU2486552 other downstream 373914 31726537 ~ 31729294 (-) True LOC110510037
TU2486556 other downstream 376814 31721952 ~ 31726394 (-) True G2175503
TU2486455 other downstream 430019 31669334 ~ 31673189 (-) False G2175420
TU2487131 other upstream 156725 32263283 ~ 32266089 (-) True G2175969
TU2487134 other upstream 178192 32284750 ~ 32285483 (-) True LOC110510065
TU2487112 other upstream 324952 32431510 ~ 32433641 (-) False cpi1
TU2487117 other upstream 325095 32431653 ~ 32433641 (-) False cpi1
TU2487113 other upstream 325266 32431824 ~ 32433641 (-) False cpi1

Expression Profile