RNA id: XM_036968072.1


Basic Information

Item Value
RNA id XM_036968072.1
length 2326
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110510059
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32202991 ~ 32219471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTAAATTCATCATGATCAACCTAGAGTTAATCAAACAGTCTGCATGGGGATCTGGTGGAGCTCTACTCAACTTGTAATAAGTGGCTGTGGTCTGGGGTCATGAAAAGAACTGAATGATCTGTGTGACTGTTGCTGTTCCAACAGGTGGGTTGACTTAGCACCGTTATTATCACCTCAGAGCACAGTCACTGAACACTGTCCTAGAAGACTTCTCCGGTGGTGGGAGACCACTGAAGCAGAGCTCTCAGCCTCTGTGACCATGTCATTCTGATGTCACTTGAAGGTCAGTAACCAGGCCTGGAGGCCGGGAAGGGCATGCCTCAGTGTTGGGATCATAGAACTGAGACTCACCCTGTTCTGCACCCTTAAGTCCCCAGAAATACCACCTCTTATTTAATACAACCGCCTGAAATCACTTCAGCAGGCAGCGAGGCCAGCATTCTGGACATGAAACCTTTGAAAATCAagacctacctcatcccaaaCATACCCTTCCCCTGGCCGGGCCTGTCATCTACGCAACAAACATCTTGACAATGAGGATTGCAGAAGTGTAACACTGACAGGGTTGGAGGACGACCAGGTTGACGAGGTACCAGTCGACAGGTAAACAGGGCAACAGATCATCCAGCATGGTGGGAAGGAGACGCGGCTCCAGAGCCACCAGGGGGTCACAGAAGCCCCAACAGCAAAGCACGGGGGGACCCCGCAAGAGGCTGAGAGAGCCAGCATTATTTGCCAAGGAAGCAGGATATGAGTCGGAGGTCCCTCATGAAAAGCTGACCATCGCCCAAGCCAAGAGAGGCACACCAGCAATCCGGCCGGTCCGAGTCTATGCTGATGGGATCTTTGACCTCTTCCACTCTGGACATGCTCGCGCTCTGATGCAAGCCAAGAACCTGTTCCCCAACACACATCTCATAGTGGGAGTCTGCAGTGATGAACTCACACACCGGTATAAGGGCTACACGGTGATGACAGAGTCTGAGCGCTACGAAGCCCTGATACACTGTCGCTATGTGGATGAGGTGGTACGGGACGCTCCCTGGACCCTCAGCCCTGACTTCCTGAAGATACATAAGATTGACTTTGTAGCGCATGATGATATCCCATACACGTCTGCTGGATCAGAGGATGTCTACAAACACATCAAGGAAGCAGGGATGTTCGTGGCCACACAGAGGACAGACGGCATCTCTACATCTGACCTCATCACCAGGATAGTGAGAGACTACGACCTCTATGTCCGACGTAACCTGCAGAGAGGCTACACAGCCAGTGACCTCAACGTTAGCTTCATCAGGGAGAAGAAAATCCGTCTTCAAAACCAGGTGGATCGTATGAAGGAGACGGTAAAGACAGTAGAGGAGAAGTCCAAGCACTTTGTGCACTCGGTGGAAGAGAAGAGCCAAGACCTCATCCACAAGTGGGAGGAGAAGTCCCGGGAGTTCATTAGTAATTTCCTGGAGTCTTTTGGTCCAGGTGGAGCGTGGCATGTGATCCAGGAGAAAAGTGGACGCATGCTCCAGGCTCTGTCACCCTACGCATCGCCCGTCGCCTCGCCCCGTGGCTCCCCCAGCAGCAGCCCCACCAGAGGGCGCTCCCCATCGCCTCCCTCCTCTCAATCCCCTCGTTCTCCTCGTTCCTCCGCCACCTACCCCAAGGGTGCCTCTGCCCATCCCTCAACTTCCCTCAGCAGCATGAGTGAGGGGGATGACGACGAGAAATAGAGACAGCACTGTCCCTCAAACACTCAGTGTACAGGTAACTGccgaaataaaggaaacacttgaagAAACACTTGACTAAATGAGAGATACAGGACAAGGGAAGCTTGGTCTTTACATCCTCAAAGACATGCTTCTGTCAGCTGTAACTATTTTGAATGTGTCAATAATCATGTGTATTTCAAACATAGACAAAGATAGATTCAGATTTTTGACTTTGTagatgtaactgccaaaataaaggaaacatttgagtaaatgagggatacaaagtatattgaaagcaggtgcttccacacaggtgtggttcctgtgtATATTAAACAATTAGCATCCCATCAttcttagggtcatgtataaaaattcccagttgcccattatGTTGGCTAACATGGCTAGAAGAAAAGatttcagtgactttgaaagaggagaCTCAAAGTAGCATAGAGGGTTTAaatggtgtgtgggtgtgtctcagTCATCTGATCTCaaaccaattgaacacttatgggagattctggagcggtgcctgagCCAATTTTCcgccaccatcaacaaaacaccaaatgatggaatttctcatggaggaatggtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487090 lncRNA downstream 4332 32198242 ~ 32198659 (-) True G2175946
TU2487089 lncRNA downstream 5298 32197202 ~ 32197693 (-) True G2175945
TU2487084 lncRNA downstream 12371 32190230 ~ 32190620 (-) True G2175940
TU2487055 lncRNA downstream 26130 32174065 ~ 32176861 (-) False G2175918
TU2487144 lncRNA upstream 42321 32261785 ~ 32262548 (-) True G2175982
TU2487136 lncRNA upstream 62724 32282188 ~ 32282710 (-) False LOC110510065
TU2487139 lncRNA upstream 63377 32282841 ~ 32283343 (-) False LOC110510065
TU2487150 lncRNA upstream 91972 32311436 ~ 32311652 (-) True G2175988
TU2487184 lncRNA upstream 159771 32379235 ~ 32379452 (-) True G2176010
XM_036967711.1 mRNA downstream 96433 32103208 ~ 32106558 (-) True LOC110509424
XM_036967893.1 mRNA downstream 165164 32021450 ~ 32037827 (-) True LOC110510054
NM_001124596.1 mRNA downstream 244427 31956161 ~ 31958564 (-) True LOC100136606
NM_001124255.1 mRNA downstream 255297 31942742 ~ 31947694 (-) True LOC100135879
XR_005040518.1 mRNA downstream 273924 31920420 ~ 31929067 (-) True LOC118945355
XM_021591347.2 mRNA upstream 11389 32230853 ~ 32237582 (-) True LOC110510060
XM_036967770.1 mRNA upstream 26759 32246223 ~ 32251726 (-) False poglut3
XM_021591351.2 mRNA upstream 26760 32246224 ~ 32252711 (-) False poglut3
XM_021591352.2 mRNA upstream 26760 32246224 ~ 32252711 (-) True poglut3
XM_021591361.2 mRNA upstream 62937 32282401 ~ 32287263 (-) False LOC110510065
TU2486563 other downstream 464756 31736913 ~ 31738235 (-) True LOC110509376
TU2486552 other downstream 473697 31726537 ~ 31729294 (-) True LOC110510037
TU2486556 other downstream 476597 31721952 ~ 31726394 (-) True G2175503
TU2486455 other downstream 529802 31669334 ~ 31673189 (-) False G2175420
TU2487131 other upstream 43819 32263283 ~ 32266089 (-) True G2175969
TU2487134 other upstream 65286 32284750 ~ 32285483 (-) True LOC110510065
TU2487112 other upstream 212046 32431510 ~ 32433641 (-) False cpi1
TU2487117 other upstream 212189 32431653 ~ 32433641 (-) False cpi1
TU2487113 other upstream 212360 32431824 ~ 32433641 (-) False cpi1

Expression Profile