RNA id: TU2487134



Basic Information


Item Value
RNA id TU2487134
length 734
RNA type TUCP
GC content 0.39
exon number 1
gene id LOC110510065
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32282188 ~ 32287263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGATAAAGAATGATTCATTAATTATCCTCTTGGCTGTTGATAAGTTTGACGCTTTTCAAAATAGGCTTGAACACGTGCATGTCTATGTTCTGATTGACTAATGTGCTTAGTTGGAGAAATCCCAAAGACGATCTACTGACTTAACTCACTCCACTCTGTCATCATTTTTTGATAAAAATTCTAAGCTTCTCGAGCTCTTTTCTCACTTTCATTTTGTCGCTCGACATATCACGTTGGCGTTCTTCTGTGTCACCATGGGCAACTATAGCTCTGGCCTTACCGTGGGTAAGCCATGTCACCATTCTCAAATCCTTTCTTATGTTCCTTTGAACTCACCTATGACGCTTTAGATTCTCCAAACTGTCATCAATGGCAAAACAATGTAATACTGCATGACACTCTATTTTTGACAGCCTGTTGTTTTGCTTCAATGACCCCACCATTAATTATGCCTTCAAATCAAGTCAACAATTTATCTAATGCGTCATGTTGGTTTGTTTTATTTCTCCAAGACATTGAAGATTTTGAGTCACACAGTGTTTCAGTCACAGAGACCCTGAACCAATTGGCACCACGTGTGGCGGATGAAAGATTTCAGTCACAGATTTTTTCACTGGTATGTATATTTGTACACTGATGTCAGTGGCTATCTGGTTATTATTGTGGATTAGTGAAGCATGCGAGAGGGGTTGTTTATTGTCTCTGAGGAAACTTTTCAACTACTCACTGTGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2487139 lncRNA downstream 1407 32282841 ~ 32283343 (-) False LOC110510065
TU2487136 lncRNA downstream 2040 32282188 ~ 32282710 (-) False LOC110510065
TU2487144 lncRNA downstream 22202 32261785 ~ 32262548 (-) True G2175982
TU2487090 lncRNA downstream 86091 32198242 ~ 32198659 (-) True G2175946
TU2487089 lncRNA downstream 87057 32197202 ~ 32197693 (-) True G2175945
TU2487150 lncRNA upstream 25953 32311436 ~ 32311652 (-) True G2175988
TU2487184 lncRNA upstream 93752 32379235 ~ 32379452 (-) True G2176010
TU2487155 lncRNA upstream 94909 32380392 ~ 32390112 (-) True G2175993
TU2487169 lncRNA upstream 105391 32390874 ~ 32391955 (-) True G2175995
TU2487141 lncRNA upstream 106709 32392192 ~ 32392688 (-) True G2175979
XM_021591351.2 mRNA downstream 32039 32246224 ~ 32252711 (-) False poglut3
XM_021591352.2 mRNA downstream 32039 32246224 ~ 32252711 (-) True poglut3
XM_036967770.1 mRNA downstream 33024 32246223 ~ 32251726 (-) False poglut3
XM_021591347.2 mRNA downstream 47168 32230853 ~ 32237582 (-) True LOC110510060
XM_036968071.1 mRNA downstream 65279 32202991 ~ 32219471 (-) True LOC110510059
XM_021591368.2 mRNA upstream 1939 32287422 ~ 32295869 (-) False si:ch211-114c12.2
XM_021591365.2 mRNA upstream 1939 32287422 ~ 32296196 (-) False si:ch211-114c12.2
XM_021591363.2 mRNA upstream 1939 32287422 ~ 32296426 (-) False si:ch211-114c12.2
XM_021591364.2 mRNA upstream 1939 32287422 ~ 32296426 (-) False si:ch211-114c12.2
XM_021591366.2 mRNA upstream 1939 32287422 ~ 32296426 (-) True si:ch211-114c12.2
TU2487131 other downstream 18661 32263283 ~ 32266089 (-) True G2175969
TU2486563 other downstream 546515 31736913 ~ 31738235 (-) True LOC110509376
TU2486552 other downstream 555456 31726537 ~ 31729294 (-) True LOC110510037
TU2486556 other downstream 558356 31721952 ~ 31726394 (-) True G2175503
TU2486455 other downstream 611561 31669334 ~ 31673189 (-) False G2175420
TU2487112 other upstream 146027 32431510 ~ 32433641 (-) False cpi1
TU2487117 other upstream 146170 32431653 ~ 32433641 (-) False cpi1
TU2487113 other upstream 146341 32431824 ~ 32433641 (-) False cpi1
TU2487115 other upstream 146426 32431909 ~ 32433641 (-) False cpi1
TU2487111 other upstream 146466 32431949 ~ 32433641 (-) False cpi1

Expression Profile