RNA id: XM_021591366.2


Basic Information

Item Value
RNA id XM_021591366.2
length 2931
RNA type mRNA
GC content 0.52
exon number 9
gene id si:ch211-114c12.2
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32287422 ~ 32296426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caataactcaattcgcctaTGCACTCCTATACAACGCAATTAGTTTTTTTCCTTTGGCAAAGGGTACATTTGACAAAAATTAGTCCACTCTGTTTTGGGAactgaaaactgtattgagatcagatGTTTTAATCGATGAGATGATTAGCAGGACGTCGGCCAAAATTCATCTCGTTCCATCTTCTGTAGTGAGTGTAAACGCCAAGCGGATTGCTTCACATCTGGTGAAATATGTCTCATTGTTCTAACTGTGCCTCAAGCGTTTGCAGCACTGAGGATTATTCAGTGTATCCCAAAGATGGTCAGACCTTACTCCGGACCTCCTCGGTTCAAACCCAGGCCCTACTCTGATGGCTACAACATGCCATATGAAGAGAATTACAGCCCCCACCCCAGGAGTCAGAGAGGATTCCGGGGCCACTCAGGAAAGGTCCCTCCAAGCTGGAGAGATTCCAGAGGCAGAGGACGTGCTCACTTTGCCAAAAGGCCCCCACTGATGGGAGAACGGAGGCCCCCACTGATGGGAGAACGGAGGGAGCGACCTTTCAATCAGTGGAGGTCCCAAAACCAGGATTCCTTCAACACATACCCCTCCCAAACGGAGCCCCATCATGGCCACAGGAGGCCTTCCCCTTCCGGGCCAAACCGTCCCCCCCCAGCTCAGCATAGGTCCTCCCCTCATACTCCTGGACAAGGGCCCCAGGGCCAGAGGGGTGCACTTATCCATGGAAACCACTCAGGTTACAGATCCCCCTCACCACGCCATTATCATAACCAACCTCCTGACAGGAGGCCACAACCCTCACAGTCCCCCCACAGTTCCTTCAGGGGCCCTCACAAGCGCCCAAGTCCGTCTCACGAAGAGGACAGGAGCTGGGGTGTCCGGCCGCCTTATAGTCCCAGGGAGAGGCAGTTTGAGCGCCCAGGTCGCGGGGGGATGCGCTGGAATGGGCCAGGGCCCATTCCCCGACCACACAATGGTGAACGTGGGCCCTCTGGCTCCCCCCAGAGAAAGCTACGGGATTTTCATGGCAGAGGTCCTTATCCAGAGAGGTGGTCTGCTGAGCAAGATCCCAGGCAGCAGCATGGAGTGGTGGGAAGGGAGCGGGAGGGCAGCGGACGCCGCAGCACTGAGTGGGCACAGGAAGGCAGCCCTCCCCACAGATCCCCCACATGGAAAGGAGGTTGGTCGTCGTCCTCTTTCCACGAGAACAGCCCTCAGGCAAGGCCAAGTGGACCACCACACAAGAGGAAGTTCCAGGAGCGCGGGATCCCTCCTGCAGGCCCTGATGTGGAGCATGGACACCCAAAGCGCCCTCGCAGAGAGATTCCACATTACTTCAACACCCCTAGGGGATTTGGCGGCCGTCCCTTGTCATTCAGGGGCAAGAGTCGTTTGCTGAAGGGGCGTAAAATGAGAGCGGAGTCGGTGATGAGGCTCAAAGTACCTCCACCTCATCCCCAAGGAGCAGAGATCCATGAAGAGGAAGGGCCTCATACGTCCAGGGGAAATGCGCCATCCAAGTTTGCTCTTCGGAGGGAGCGTTTCCAAGCAAACGCTGGCCCACTGAGGAAGAGGCCGATGCCCCATCAATCACCCCCCAACCCAGAAGCCAATTCAACCAAGTCTTCCAGGGACTCAGAGTCACAGAAGGAACAAGTGGACTCTCAGCGAGCCTTGAGCACACACAGCCCTTCCTCTATAGACAAACGGCTGGCTCGTGACCTAGTCGTTGTGTCCCAGTGGCAGGCACCTGGGACTAACTCAAGCTCAAAGGACAGCCCCCCAAGGGATAGAAGTAGGACACCAAAAAACAAAACTGAGCGCTATTACAATTCAGATGAGCAACTTACGCTGAATGAACGCTTCTCTAAAATTCATGACTCCAGTCCTTCCCCTTCACCAAGAGACCGGAGATATGCGGAAAGGCCAACGAATGTGCCACAGGAGAACCACAGACCTGAAAGACCCTTCAGGAAACCAGGACCACAGAGATCGAGCTTCCGTCCCACTAGCCCAAATCGCAAACCAGGTCCTCCCCCTCAGAGAAGACCAGGTCCTCCTCCTCAGAGAagatcaggtcctcctcctcaGAGAAGACCAGGTCCTCCTCCTCAGAGAAGACCAGGTCCTCCTCCTCAGAGAAGACCAGGTCCTCCTCCTCAGAGAAGACCAGGTCCTCCTCCTCAGAGAAGACCAGGCCCTCCTCCTCAGAGAAGACCAGGCCCTGAACCGCCTGGTCCCTTTAGGAAGCCACTCATGGGAGGCTTTGTGCCACGTCCTTTCTCTCAAAGGCCAGTGTTCAGGAAGAGCCAGAGCATCCTGTCCAAATACCGTAACATGCCGACAATGCGTCAACATGTACCCCCCAACAGAGGGTCTAATTATCGCCGCTGGTGATCAAACTAGAGGGACCAAGGGCACAGTTCAGGGTTACACACCCTTTCCCCCTTGGCCTTGGGTTGCGTCTTTGTCCTGGAGATGGTCCCCCAAAAGATGGTCTCCCTGTCGTCAGGAGTACATCAGAAAATGACAGTTGCACTGTTTATTTTTTGACTCTGTTTGCATAAGATGTGTTTAAATATACAGAATAGGCTATCAGTTTCTAGTCTTCCAGACTGGTTATTATGGACATTGTTTTTTTGATTTCACAACTGTTACACTTCTCGTATCGTGTAAATGAAATTCTGAAGATTTTACCTTTTTATAGTTCCCAGTACCAATTTTTTGTTTTTCCCCAGTGCTTAGAGAAACACTTTTTGCTGTAAAGTAGAAGCAGTCTTCAAGACGATTCCCCAAGGGCTGTTGAATATGATGCTCAGTCTAATTCTCAACCTGTAAAAACTACTGATGCCATCTTCAAGTCCTGCTCATTTCAACCTATGTACATTGTTTTGTTTAAGATATTGCAAATAAATGGCTCAACATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487139 lncRNA downstream 4079 32282841 ~ 32283343 (-) False LOC110510065
TU2487136 lncRNA downstream 4712 32282188 ~ 32282710 (-) False LOC110510065
TU2487144 lncRNA downstream 24874 32261785 ~ 32262548 (-) True G2175982
TU2487090 lncRNA downstream 88763 32198242 ~ 32198659 (-) True G2175946
TU2487089 lncRNA downstream 89729 32197202 ~ 32197693 (-) True G2175945
TU2487150 lncRNA upstream 15010 32311436 ~ 32311652 (-) True G2175988
TU2487184 lncRNA upstream 82809 32379235 ~ 32379452 (-) True G2176010
TU2487155 lncRNA upstream 83966 32380392 ~ 32390112 (-) True G2175993
TU2487169 lncRNA upstream 94448 32390874 ~ 32391955 (-) True G2175995
TU2487141 lncRNA upstream 95766 32392192 ~ 32392688 (-) True G2175979
XM_021591361.2 mRNA downstream 159 32282401 ~ 32287263 (-) False LOC110510065
XM_036967270.1 mRNA upstream 22091 32318517 ~ 32342176 (-) False LOC110510067
XM_036967266.1 mRNA upstream 22091 32318517 ~ 32342177 (-) False LOC110510067
XM_036967268.1 mRNA upstream 22091 32318517 ~ 32342177 (-) False LOC110510067
XM_036967269.1 mRNA upstream 22091 32318517 ~ 32342177 (-) False LOC110510067
XM_036967263.1 mRNA upstream 22091 32318517 ~ 32342178 (-) False LOC110510067
TU2487134 other downstream 1939 32284750 ~ 32285483 (-) True LOC110510065
TU2487131 other downstream 21333 32263283 ~ 32266089 (-) True G2175969
TU2486563 other downstream 549187 31736913 ~ 31738235 (-) True LOC110509376
TU2486552 other downstream 558128 31726537 ~ 31729294 (-) True LOC110510037
TU2486556 other downstream 561028 31721952 ~ 31726394 (-) True G2175503
TU2487112 other upstream 135084 32431510 ~ 32433641 (-) False cpi1
TU2487117 other upstream 135227 32431653 ~ 32433641 (-) False cpi1
TU2487113 other upstream 135398 32431824 ~ 32433641 (-) False cpi1
TU2487115 other upstream 135483 32431909 ~ 32433641 (-) False cpi1
TU2487111 other upstream 135523 32431949 ~ 32433641 (-) False cpi1

Expression Profile