RNA id: TU2487196


Basic Information

Item Value
RNA id TU2487196
length 1201
lncRNA type sense_over
GC content 0.47
exon number 3
gene id LOC110510075
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32451347 ~ 32460638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACTAAAGAGTGTCTGCTTGTCCACTACTGGTCCTCAGCACCACTGGTCCTCCTGCTCCTCTGTTCTGGTTGTTTTGCAGACAGCAGGGTGAGAACTTCTGGTAACATCACAGCAAAGATTGGTCATCCTGTGACTCTGTCCTGTGAGCCGTCTGGAGACGGGAATGTGTCCCAGGTTGAGTGGAGGATTGGAGGGTGTGATGGCCGTAGGATTCTGGTTTCGAACACAAACAACCCAGTTGTCGTGGAGCAGGACTATATCGACCGTGTCTCTGCTGTGACGATGCGTGGATTCACATTACTAGGGACACAGAGGAATGACGCTGGGCCGTACTGCTGTTCTCTCACAACCTTCCCACTTGGGTCTTTGAAATGTCACCTTTTTTTGTATCTGACTGAGGACCCACAAACAGGTACTGCCCACCTTCACCAACTCCAAACCAGGCTAACATGTACCTCACATATTTCTCTTCTACGCCAAGTTGTTCTGCCATAGAAGTACCTAGTCACCAAGATGACACCCACAACAACCATGCGCGTGCTTCCTTTCTGAACTGTCACACTAACTTATACGTCAGCTATTGTAATAATCTGAACAAGGATGTAGAAAAGATAAGAAATGTCTAACTAGTTCCCTCCTGTTTTGTCAGCCTTCAGTGAATCTCCTCACATAATAATTGTGTCCATTGCGAGTGGGATTCTGGGAATGCTGGTGCTGGGAGGGACCATAACAGCACTGTTGCTCTGTCAGAGGTGTAGAAGACCCGTGCAGGACCCTGTTCATGTGGCAGTTCATCCAGGGGGGCTTCCACAAAaacccccctccatcctccagAAAAGCCAGGCCCATGctcccccaccacagaggagtaacagtgaggaggaggaggagaacggggAAATGGATTACTTGAACGTTACAGTGCTTCACCTCCCCAGAATTCCACCTACTGCCTCCTCTGCCTTGAGGAAGAGCTAGAGAATACTGCACTCTCATACAAACAGAATAAAATACAAACAAAGACATGTATTCATAAAGACACAATATAatgtatacacacactcactgacacaaaAGCAGTTACATTCACACACATTACCTATATTTGGTTTGGGACCATTTCCAGTTTAGCATCTCCCCTACTCTGAAGTAAAGATTTAACGTTGGATTTGATCATTGTAAAAGCCATTGTAAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487234 lncRNA downstream 4386 32446936 ~ 32447135 (-) True G2176045
TU2487116 lncRNA downstream 17880 32395346 ~ 32433641 (-) False cpi1
TU2487141 lncRNA downstream 58833 32392192 ~ 32392688 (-) True G2175979
TU2487169 lncRNA downstream 59566 32390874 ~ 32391955 (-) True G2175995
TU2487155 lncRNA downstream 61409 32380392 ~ 32390112 (-) True G2175993
TU2487346 lncRNA upstream 38909 32498313 ~ 32499573 (-) False G2176141
TU2487347 lncRNA upstream 38909 32498313 ~ 32499573 (-) False G2176141
TU2487349 lncRNA upstream 38909 32498313 ~ 32499573 (-) True G2176141
TU2487351 lncRNA upstream 40519 32499923 ~ 32500268 (-) True G2176142
TU2487355 lncRNA upstream 48161 32507565 ~ 32507888 (-) True G2176146
NM_001124499.2 mRNA downstream 17933 32432210 ~ 32433588 (-) False cpi1
XM_021591392.2 mRNA downstream 25583 32422996 ~ 32425938 (-) True LOC110510074
XM_036967272.1 mRNA downstream 73314 32368926 ~ 32378207 (-) False LOC110510070
XM_036967274.1 mRNA downstream 73314 32368926 ~ 32378207 (-) True LOC110510070
XM_036967273.1 mRNA downstream 73379 32368926 ~ 32378142 (-) False LOC110510070
XM_036968272.1 mRNA upstream 2278 32461682 ~ 32470453 (-) False LOC110510076
XM_021591397.2 mRNA upstream 2278 32461682 ~ 32471105 (-) True LOC110510076
XM_036967817.1 mRNA upstream 21450 32480854 ~ 32486335 (-) False LOC110510077
XM_036967818.1 mRNA upstream 21450 32480854 ~ 32486335 (-) False LOC110510077
XM_036967819.1 mRNA upstream 21450 32480854 ~ 32486342 (-) True LOC110510077
TU2487115 other downstream 17880 32431909 ~ 32433641 (-) False cpi1
TU2487607 other upstream 183998 32643402 ~ 32644572 (-) True G2176363
TU2489160 other upstream 1051892 33511296 ~ 33512326 (-) True G2177695
TU2489480 other upstream 1662078 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 1879507 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 2343787 34803191 ~ 34809303 (-) False G2178372

Expression Profile