RNA id: XM_021591408.2


Basic Information

Item Value
RNA id XM_021591408.2
length 3369
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC110510084
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32650426 ~ 32660465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCTGGTTCCTGTGCTTTTTTCGATTCCAAGCTGTTTTCAAACATCGGCCTCTTCCTCGCTTAAACTTTTACTTGACAGGTAGTTTAGCAGGTAGAGGAAGGGGCTATGGAACATcagaaactgggtggttcgagccctttATACCGTaacatggAATACACTTCTCTGTGCCCTGGAAATTTGAGGATGGCGGGCAGTGAGGGTCAAAGTTCTGCACGCAAAGGATCTGGTGATGGAGCATTGAGCGCTATGAATTTATATGCCACTCTGGGGCTCTCTCCAGAAGACGTGGATGCTCTGGCCAAGATTCCAGAGAACGAGATCAGTGTGGAGACACTGCCTTATCTGATAATGCAACTGAAGGCCAATCGAGCCAAGCAAGAGGAGCAGGGAGAGCCCTCCCCAAAGAGAGACGGACAGGAAGAGGATACAGATGTTAAAGACGGCGGCAAACTGGACAGTCCCCCTGCATTCCGTCTCCGGTCAAGCAGCCATAGTGACACTGACTATAAGAAAGTAGAGGTGCGACCAGAGCAGGCCGAGGCAAGAAAAGATTCCCACCACACTAGGCCCTCAACGGAAAAGACATCAGACAGCCAACCTTCTTCCTATCAATTGGAAGATTTTCAAGGAGTTGTACCCAACATTTACCCACACACATGCTCGCTATGCTTCTGTATGTTGAATTCTACTAAGCAATGGAAGGATCATCTCAATGGATTACGCCATGCAGAGGGCTGTCGGGAACTCTTGCGTCTatttcCAGATTGGGAAAAACAAGATGTCCAAGGGAAGAACATACCAATTTCCATCCCAAGTAGAGATGCTAATTCACCGCCCAGAAGAGCGCCACGCCCTGCTATGCCTTACAAGAGACAACATAGCTCAGACCGTGTAGGAGGTGAAGTCTGGTCTGCACCAGAAAGACACCATTTGAAGCCCAAGGCTGGCACAAAGGTAGTGGTCGCTAAATATCCCCGTGGGTCTGTTGCTGTTGAAGACTTGGTGACTTTGGCTAAGCCATTCGGCACAGTTGTAAAACATCTGGTGTTCCCCTGCAAGGGCTTTGTGGAGTTGAGTTCGCACAAAGAGGCAGTCAATATGGTGGATCACTACAGTGAAAGCAAAGCTATTGTGAAGGGAAATGGTTTGACTCTGTACCTGTCACCTGTAGTGTGCAGTATTTATACACCAAGGTCGGATGAACCACCAGGAAAACGCCCCAACAAACAAGTTAGCAGTACAGTAGTTTGTTTTTCCCGTGTATCTCCTGGGAAAGAAAGAGAATCTGAGATTCTCGATCTTGCCAAGATGTTTGGGGATGTGCGACATTCGTCATTTTTAAGTGATCAGGCCCTGATTGAGATGGTAGATTGGAAGGATGCTGACATTATGGTGAAGTACTACCACTCCAACCCCCTCAAGATCAATGGAAAGAGTGTCAAAGTCAGCTTGTCATCGTCACTGAAGCGTCTGAGAGAAAGTCCTGACTCCACCACATCCAGAAGAACAGATTCCAGTAAAAGCCAAAGCAGCAGACAGAAGAGTGAGGAGACCAGCAAGAACTCAAACTCCACAAACAAAGAGGGATCCAGTACAGGCAAACAACCTGCTGAGAAAGTGGTGGAACAAGGAAAAGGTCAACAAAGCTCCTCAGAGGAGGTTAAGGAAGAGGTAAAGCAGGACATCAAGGACGAGGAGACCAAGGAAACGATTGAGGTGGTCAAGaatgagagaaggggggaggacaTTGATTTGGAAAACAAAGAACCAGACAAAGAGAGCGTCCAGGTTGAAGATGACCAAAGCTTGTTAGATAAGTTTGGAGCAGATACTAACGACTCTGCTCCTTCCAAAAGTGCCTCTCTGGTGGCTGACTCTAAAGATAAGGGGGAACCTGAAAGCACAGAATTGTTGGCAGACAATACCTTGGTGGATTCTGACCTAAAGGCTGCCGATGATCCAGCTCTGTGTGATGCTGACGTCTCAATGGAGGACATGATGGAACAGGAGAGCTTTCATGAACATGGTGACGATATGGATGACATGGATTTCCCTGATAACATGGATGATTTTGTTACATTGGATGAACTCGACAATGATACTGGAGAGGACGCGTCAATGGAGTCAAAGGATTCTTCATGGGATGGAAAAGTTGTCCATATTAGCCCAATCAGAAAGGGCTATAGAGACGTAGAGGTGGCCATCTTGAAACTGGCAGAGCGAGCAAACGTGAAAGTTGTAAACCGTACCATATCCTTCTTCAGACAGGAGGGATGGTTAGAGCTTGATACTACCGATGAAGCGCATAAGATGGTGAAATTCTACAAAGGCAAAGGACAGTTGTTGGGGAAACCTGTCGATATTAGAATGTGCTATTCACAGAAAAAGTTGGAGAGTCCCAGTGGGAGATCCATCTACATTTGTTTGCTTCCACGGCAGAAGTACTCGGACGTCTCTCTGCTACGGCTTGCCCAACCTTTTGGGAAAATCACTGGCTATCATTTGAACTGGGTTCATAGAAAGTGTTATATCCAGTTTGAGAGTGTGGAAGCCGCTCAGAAAATGGTGAAGAAGTGCTTCCAACGTCCTCCCAGATTTTACGGCACCCTGATAAGGGTCAGTTTGTGCAAAAAGGGAGACTCACTGATATCCTGGAAGCCTCCAGTCAAGTATGAGCTGTGGTTGGCCAGTCAGAACAACAGAAGAACAAGAGATCGCCATGGAGATGAGACTAATGGCCAGTCAGCCAAAAGCCACTCTCCAGTGGTGAAAGAGAAGGATGTCCAGCGACCTGTGTCTGATAGTAAGGGGGTCTGTGTGGACCTTGAGGGTGAGGAGACCAGTGGTGTGGAAGCTGtcccagagggagaggagaagaagaagcagcaggAGCCTCTGGGTCCTTATCAACCCAACAACCCAGTTGGGTTAGACTATCTGGTGCCAAGGACCGGATTTTTCTGCAAGCTGTGCAACATCTTCTACACCAATGAGAAAACAGCCAAATCAGTCCACTGTAGCAGTGAGGCACATTACCTAAACCTGAAGAGAAAGATGGATGAAGATAAACAGCCCGTAGCTGATTGAGAGGGTTGCTGTCCACCTGTAGTCTTCCCAGAGGAAGATTGGCCATTTTTAGTATAAATGTTTCTGTCCAGTTTTAACATTCCAGTATTTCCTGTTACTGTTGACAGCATTATGTTATCCATTTGAAATGAATTAATGCAGCCTATTACAAAATGTAGTCCCATTATGTGGTTAATAATAGTACCTGGATATAGTTTCCTCTTATTGAATAAACAAATGTTTGCTTGATGTATTCTTTGACTTCTGGAATTAAATTGGTTGCTTCTGAAATGGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487621 lncRNA downstream 2492 32646687 ~ 32647934 (-) True G2176377
TU2487612 lncRNA downstream 20213 32629948 ~ 32630213 (-) True G2176368
TU2487399 lncRNA downstream 79048 32570852 ~ 32571378 (-) True G2176190
TU2487393 lncRNA downstream 87369 32562490 ~ 32563057 (-) True G2176184
TU2487392 lncRNA downstream 88968 32561241 ~ 32561458 (-) True G2176183
TU2487605 lncRNA upstream 64238 32723204 ~ 32726947 (-) True LOC110510092
TU2487606 lncRNA upstream 108617 32767583 ~ 32769398 (-) True G2176362
TU2487603 lncRNA upstream 115853 32774819 ~ 32775108 (-) True G2176359
TU2487604 lncRNA upstream 120328 32779294 ~ 32779568 (-) True G2176360
TU2487680 lncRNA upstream 132912 32791878 ~ 32792317 (-) True G2176433
XM_036967819.1 mRNA downstream 164084 32480854 ~ 32486342 (-) True LOC110510077
XM_036967817.1 mRNA downstream 164091 32480854 ~ 32486335 (-) False LOC110510077
XM_036967818.1 mRNA downstream 164091 32480854 ~ 32486335 (-) False LOC110510077
XM_021591397.2 mRNA downstream 179321 32461682 ~ 32471105 (-) True LOC110510076
XM_036968272.1 mRNA downstream 179973 32461682 ~ 32470453 (-) False LOC110510076
XM_036968158.1 mRNA upstream 3326 32662292 ~ 32669343 (-) False zgc:175280
XM_036968157.1 mRNA upstream 3326 32662292 ~ 32669365 (-) False zgc:175280
XM_036968155.1 mRNA upstream 3326 32662292 ~ 32669370 (-) False zgc:175280
XM_036968156.1 mRNA upstream 3326 32662292 ~ 32669370 (-) False zgc:175280
XM_036968159.1 mRNA upstream 3326 32662292 ~ 32669370 (-) True zgc:175280
TU2487607 other downstream 5854 32643402 ~ 32644572 (-) True G2176363
TU2487115 other downstream 216785 32431909 ~ 32433641 (-) False cpi1
TU2489160 other upstream 852330 33511296 ~ 33512326 (-) True G2177695
TU2489480 other upstream 1462516 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 1679945 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 2144225 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 2144225 34803191 ~ 34809303 (-) True G2178372

Expression Profile