RNA id: TCONS_00058256


Basic Information

Item Value
RNA id TCONS_00058256
length 1059
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id XLOC_028914
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 33698726 ~ 33699784 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCTTAGAACCATCATTACAGGTCTTTGATCAAAGCCTATTTCTTGTATTTGGGTATACTCACTATATTTGAATATACCCAATTCGTGGTTCCATAAAGAATGTGTTTGAAGCTATTAAAAATTTGAGACtattcttaatattttagaaTCTTTTTATGGGGTAGAATATGTATGTTCTTCAACAAATTTGCTACAAACatacattgtttaatttatttttactttttacagaTTTGTCCAATTTGCCAGATCTCTTTCCCAACTGATGTCTTGCCTTTTCATGCAAGCATGTGTGGTGAAGGGTAAAGTTATGCTAAAAATTGTAGGATGACATGCCTTTAATACTAAAGGATTAGTTTGcacagtttgttttggttgtaTATATCTCGAGGGAGATGTATAAAGATCAGATGGAATGTAgggtaaaaaattaacaaaatagttttcTGGTGGActgtcttaaatttaaattaatgtgtTGGTTTCATAAACTGGGTCAGTAGTAGACATTATTAGATTTGATGTATGTAGCTTTTATAAGCCTTGCTTTGAGAAAATCATTACTGGTGACTTTTGACATTAATGACTTTGTCTGGCACTAGAGTCTAAGCCTTGTCTATGAAACTGGGCAAATGCTTTTAATATGCATGAAAATTTTTGAAGTGGCTTAATGAACAAAATTGAAATTGTTTGTGTCTTGCCTGTTTTAGAGAAAGGACTTTTGGTGACAATGATTCTTCATTCACTTTAAATACAGAAGAATTGCCAGGACCCTCAACTGCACAATCTTCAACATCCCTGTCTGCAGGTTAGACacaacacatttaatttttttttagtgctgttgtactgtaaaatgataagtgcatctttattcatttattctttcatcttttttgtattgttattcaACTATGCTTGTAAAATGGTATTTAGataaattgttcatttgatttCAGCATGGAAAAATGAAATTGACCCATTCAAATCATCTCGAATGTTCTGTGATGAGTTGCTCTCCATCAATTCACACTGTCCATTTCTATCATTACTCATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058255 lncRNA downstream 251912 33417548 ~ 33446814 (-) True XLOC_028912
TCONS_00058254 lncRNA downstream 279140 33417548 ~ 33419586 (-) False XLOC_028912
TCONS_00058253 lncRNA downstream 563088 33128015 ~ 33135638 (-) True XLOC_028905
TCONS_00058252 lncRNA downstream 801593 32758196 ~ 32897133 (-) True XLOC_028902
TCONS_00058251 lncRNA downstream 980525 32717318 ~ 32718201 (-) True XLOC_028901
TCONS_00055973 lncRNA upstream 96908 33796692 ~ 33808943 (-) False XLOC_028916
TCONS_00055974 lncRNA upstream 106549 33806333 ~ 33808943 (-) True XLOC_028916
TCONS_00057370 lncRNA upstream 259591 33959375 ~ 33961465 (-) True XLOC_028917
TCONS_00055977 lncRNA upstream 659391 34359175 ~ 34361549 (-) False XLOC_028920
TCONS_00055978 lncRNA upstream 660990 34360774 ~ 34362421 (-) True XLOC_028920
TCONS_00055969 mRNA downstream 173507 33524237 ~ 33525219 (-) True XLOC_028913
TCONS_00055968 mRNA downstream 293243 33399196 ~ 33405483 (-) True XLOC_028911
TCONS_00055965 mRNA downstream 327092 33364466 ~ 33371634 (-) True XLOC_028908
TCONS_00055964 mRNA downstream 367045 33310760 ~ 33331681 (-) True XLOC_028907
TCONS_00055963 mRNA downstream 509656 33179367 ~ 33189070 (-) True XLOC_028906
TCONS_00055971 mRNA upstream 21019 33720803 ~ 33763368 (-) False XLOC_028915
TCONS_00055970 mRNA upstream 21019 33720803 ~ 33763368 (-) False XLOC_028915
TCONS_00055972 mRNA upstream 22292 33722076 ~ 33763221 (-) True XLOC_028915
TCONS_00055980 mRNA upstream 743866 34443650 ~ 34459618 (-) False XLOC_028922
TCONS_00055981 mRNA upstream 743998 34443782 ~ 34459615 (-) False XLOC_028922
TCONS_00055967 other downstream 306805 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055966 other downstream 308342 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055943 other downstream 1440996 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055942 other downstream 1442291 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055912 other downstream 2471099 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055975 other upstream 267133 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055976 other upstream 268426 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055986 other upstream 853283 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055991 other upstream 1533513 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055992 other upstream 2035222 35735006 ~ 35735169 (-) True XLOC_028934

Expression Profile

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