RNA id: XM_021591441.2


Basic Information

Item Value
RNA id XM_021591441.2
length 3301
RNA type mRNA
GC content 0.56
exon number 17
gene id kif20a
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33011238 ~ 33019372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTGATTCAGTGGACGCCTTGAGGGAAGTGTCTATGCACAAAACAAGGGGCATCGTCAGGTAGCATTTCATGGCTAGATAGAGCAAGTTGTTTCTGTTTAAAAGGGTCGTTTTTGGGGGGGTTGCATTTACGAAGATAACTCACCGCGACTGACGAGTCACCCAAAAGGTTATGGCGTTGTCTATGGCATCTCCGTGTGGAGTCCTGtctgacgaggaggaggggggcaTGGCTGTGTTTGAATCCACGGCAGCTGACATCGGTGGCCTAGTAGGACAACGACTGAACGAAGTGACTCTGCCTGAGATCTCCATAATCTCCCCTGGACTAGAACCTCGGCCATCCATCAGAGAGAAAGCATTGGCAAAGCCTGGGGTGATCAGACAAGGCAGCGGTGGTGAGGGGAACACTGACAAAGTGAAGGTGTTTCTGCGTATCCGCCCACTgactgagggagagaaggaaaggggagaggaacaGggctgtgtgtgtgtgcaaaacaAAGAGAGCCTGATGCTCAAAGCCCCCAAAGACTCCCAGAACATGAAGAGTGCAGAGAGGGGAGTCGCCCAGAGCATGCACAAGTTCAGCTTCTCACAGATCTTTGGTCCAGAGACCAAACAGCAGGACTTCTTCGAGAGCACCATGAAGGAGATGGTGAGAGACGTGCTTCGTGGAGAGAGTCGGCTCCTCTACACATATGGTGTCACCAACTCTGGCAAGACCTACACCATTCAGGGAGTGGGTCGTGAGGCAGGCCTCCTGCCCCGGGCCTTGGTGTCTTTGTTCAGGAAGTTGCAGGGCCGCCTCTACGGGGCCATGGACCTCAAGCCTGTCCTCCACCAGGAGGTACGCCAGCTGGATGCCGGTGAGGTCCGGGCTGAGGAGATCCGCAGAGACGCTCTACTCAAAGAGGAGGATGACATGACTTCTCGGATGAGAGGCGGCACTAGTACCTGGGACAGCGGCATCGGTGGACACTCCATAACCAGCCACATCGCCACCCAGCTAGAGGACTCTGACAGTGTATGTCTGGAGCCAGACAGCCTGTCTCACAGCGGaggggaggagctggaggagggggTTCAGTTCTCTGTGTGGGTGTCCTTCTATGAGATCTACAATGAGTTCCTGTACGACCTGCTTGAGGCTCTGCCCTGCCTGCAGCCTAAGAAGAGGGCCATCCTGCGGCTGAGTGATGACAAGCAGGGGAACCCTTACGTCAAGGATCTCACCTGGGTGCAGGTCCGCAGTGCAGAGGAGGCTTGGAGAGTGCTCAGGGCTGGCCGGAGGAACCAGAGCTTTGCCAGCACTCACCTCAACCAAAACTCCAGCCGCAGCCACAGCATCTTCTCCACCCGGATCCTGCACGTCCACCCAGAGGCTAACCAGGGCCAGGCCACACGCATCAGCGAgctgtctgtctgtgacctgGCTGGCTCAGAGCGTTGTAAGGACCAGCGCAACGAGGAGAGGATGAAGGAGGCCAACAATATCAACACCTCCCTCCACACCCTGGGCCGCTGTATCGCTGCTCTGAGGCACAACCAGAACAACAAGTCGCGACCCCCTCAGGTGGTGCCGTTCAGAGACAGTAAACTGACACGGGTTCTTCAGGGCTTCTTCTGCGGCCGCGGGCGCTCCAGCATGGTGGTCAACATCAACCCCTGTGCCTCCACCTACGACGAGACCCTACAGGCCCTCAAGTTCTCTGCCATCGCCACACAGCTGGTCCATGGGCCGTCCACTAAAACCCGAGTGGCCTACATCCTGTCCCTGCTGCGGGAGCCCCGGTCTCACTCCAATGACAGCACTCTGATTGAGGAAGACGAGGACAGCGATGAAGATGGGGACATCACCATGTTTGATTCAGATGCTCTGCTGCGGGCCATCGAGGTACTGAAGAGGGAGGTGCAGAGGCAGCGGGAAGAGAAGGAGGTGCTGGAGGCCACCGTCAGAGAGCAGGTGTTCTCTGAGATGATGGAGGTCATCTCTGGCATGGAGAAGGACTTCAGCCAGACCCTGGAGACAGAGAAGGCTCTGATGGAGGAGAGGTTTGAGGACAAGATCAACAACCTGCAGAAAAGCCTCAAGAGATACTACAACCAGGAAATAGAGGAGCGTGATGAACAGATTGAGGCACTGACTGCAGCCCTGGAGAAAAAGGGAGGTGTGTCCCTAGCAGAGCCAGCCCCACTCCCCCTCTTCCCACCCCTAGCCCTGGGAGGAGAGGCTGAGGGCCCCACGCCCCGTCGCTCCCAGCgcctggcctccacaaccacAGGAGAGCTGAGCAGAGTGAGGGCTGAGCTGGACCAGTGTCGTGCCGAGCTGCTGGAGAAAACACAAgAACTGAGGCGTGTCCAGGGGCAGCTCACACCACCAGAGCACTCCGACGCCCTGACCAATGCTGCCGACCGCAAGCTGGGGGAGGGCCAGAGGAACCTGCGTCAGTTGCGTCTGGACCTGCAGAGGCTGGGTCTGAACCTGCAGTCTGGAGAGAGGGCATGCTGCCGTAACACTGGTGGGGAGAGGCTGCGCCATGCGCTCACCACTGCAGACCACACACTGGCCAAACAGgACCAGACCCTGGTAGAGCTACAGAACGGCCTGCTGCTGGTCAAGGCTGACCTGAGGAGGAAGGCGGAGACCCTGGCCCAGATGGGTCAGATGCCCCCCTGTGGCTCGGCCTCTGCTACTCCTGGCTCCTGTCAGAAGAGGGGCTGTGGGGCAGCAGGCAACGCTGAGAACCAGCCGCCAGAGAAACGACACTTCTTCCGCTCCCTTTTCCCACAACACACCCCGTCACGAAACGGACAACAGGGACGCCCCCGTGAACCTCAAACCACACCCTACTCACGGATCCTTCGCTCCCGCCAACAGTCCCCTCCCCCAAGTCCCGGCCCCTCTGGCAGGTACAGGGTTACCAAGTGCTGACTTTATCCTCTACTGCTATGCAAACCAATTGTAAATCTGTActattttgcaattgttttttaaatgacTTTATTTCAAGTGTTACTACAGTATCTGCACTGCTAAGCTGTCTTCCTTAGGAATGCAAAAGTTGTTTTTGTAGTGGACTCTGGTATACCTGAGTATTAAACACAATGCTACAAGATTCTGGTTGAATGAGGACTGATGCACATATTACCTCCTGCTAAAGTGCTTTAAGAGTTGTTACTATTAGACATTTACATTGCATTCTCTAATGTAAAGGTTTTGCTTTCAATGTTTGTCCAGTCTTTCAATATACTTTGGTGCAACAGTAAAATTTATAATAAAATCTTGTACActtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487806 lncRNA downstream 17370 32993625 ~ 32993868 (-) True G2176552
TU2487804 lncRNA downstream 20267 32990750 ~ 32990971 (-) True G2176550
TU2487803 lncRNA downstream 20530 32990421 ~ 32990708 (-) True G2176549
TU2487798 lncRNA downstream 23988 32986973 ~ 32987250 (-) True G2176544
TU2487768 lncRNA downstream 64065 32946747 ~ 32947173 (-) True G2176515
TU2487872 lncRNA upstream 19592 33038944 ~ 33039150 (-) True G2176596
TU2487890 lncRNA upstream 35821 33055173 ~ 33058095 (-) True LOC110510107
TU2487897 lncRNA upstream 39417 33058769 ~ 33060451 (-) False G2176615
TU2487898 lncRNA upstream 40747 33060099 ~ 33062428 (-) True G2176615
TU2488049 lncRNA upstream 107195 33126547 ~ 33129922 (-) True G2176707
XM_036967712.1 mRNA downstream 53437 32954859 ~ 32957801 (-) True LOC118945287
XM_036968186.1 mRNA downstream 95014 32905087 ~ 32916224 (-) True LOC118945341
XM_021591436.2 mRNA downstream 166927 32842113 ~ 32844311 (-) False si:ch211-107p11.3
trnaa-agc-231 mRNA upstream 839 33020191 ~ 33020263 (-) True trnaa-agc-231
XM_021591443.2 mRNA upstream 21593 33040945 ~ 33058152 (-) False LOC110510107
XM_021591444.2 mRNA upstream 21593 33040945 ~ 33058152 (-) False LOC110510107
XM_036967591.1 mRNA upstream 21593 33040945 ~ 33058157 (-) False LOC110510107
XM_036967592.1 mRNA upstream 21593 33040945 ~ 33058157 (-) False LOC110510107
TU2487607 other downstream 366666 32643402 ~ 32644572 (-) True G2176363
TU2487111 other downstream 577597 32431949 ~ 32433641 (-) False cpi1
TU2489160 other upstream 491944 33511296 ~ 33512326 (-) True G2177695
TU2489480 other upstream 1102130 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 1319559 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 1783839 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 1783839 34803191 ~ 34809303 (-) True G2178372

Expression Profile