RNA id: TCONS_00055970


Basic Information

Item Value
RNA id TCONS_00055970
length 5331
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_028915
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 33720803 ~ 33763368 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTTCATACACACAAGAGAAGTAAAGAGTGGTGGTAAAATGTTAACCTGCGTGTGGTTGATTTAATTCATAAGTATGTTTGATCTATAAATACTTGATGAtaagacacacatacataccaCCTGTAGATCACGCAGGTGTGTTTTAGTaaagtgaaagagctcagattgtgttcctgctgcacaagagcgtctgtacttctgcatctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgacgtGTCAATAGGTCATCCACCAGACCTCAGTgaggaaacaccatcatctgcccaaagtgtggatagagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcaactggagcaggacatgaggagaagatcaagaaggagaaagcccagatcaagactgttctcactaagGGCATTgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggctgagggaaaagaccatcaggacgtagatttcatgtttgtgctttcatttcgagagctgaacttgatcagagatcatcagtacagtctttacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagttgctgtgttgatgtggagcctcctgaaaagagatctgcttccttctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaaccgtctgacagaaattcagggattcactgagtctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcactgacgcctcagtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgtttcaCTGCCATTTAACGAAGAAGAGAAAACCGCTGGAGTTGATTTTAGGACATTCATATGATCAATATATACAGGCCAGCTCTAAAAAGTCTCTGTATGATCTGCTCAGATCAGCAGTAGATAAAGCTGTAGagagtagtaatggtcatctggatctgttcctgcggttcctgctgggcacctcactggagtccaatcagagactcttccaggatctgctgacacCCACAGAGGAGAGCTCAGAGAACATCAGGAGAATCACACAGCACATTAAAGACAAGATCAAGAGAGATGACCGATATTATGACCgtctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagagggggaactctctcctgctcactgcaCAACAATttcctacatgattgagatgtcagaggagccgctggatgagttagactttaataaattcaacacatcagatgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctgctacagcggtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtcaACTGGACACCCTGAGattggacacgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgaacTGCAAGATTCTGGAGTGAAGCTTCTcactgatggactgaagagtgtgaactgtaaactggagacactgagattgtctggctgtatggtgacagaggaagcctgtggttttctgtcttcagctctgacttcaaacccttcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatgtacgactatacacacatacacacacgcacatacacacacacacacacactcactcgcacacacacacaagcgcacacacgcacactctcacacacacaaacacactctctcacacacacatacacgcacgcacacactctctctcacacacacaaactcactctcACACGCACACTCGCATGcaaacgcacacatacacacgtacATGCGCacactctcacacgcacacacacacagacacaaacacacacacatgcacatacacacacactctcacacacacacatacacacacactctcacacacacacacacacttgcacacacacactctttctcaggcacacacactctctcacacgcacgcacgcacacacagactcacacacacacacaatcagacactctctctttctctctcacacacaatcagacactctctttctctctctctctcaaacacacacagacactcacacactctctctctctttctcacgcacacacacacacacacacacagctgtggttataaatgtgtgtgttcttgtgttcagatgtctgtttcctcacgctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagattGTGGAAGAGAATCAGCcatatcctgatcatccagacagatttgatcattatcatcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatcaTGGTGTatttatatcagtgtcatataagagcatcaggaagAAGGGAAGaggtgttgagtgtgtgtttggatataatgctcagtcctggagtttgatctgctcttcctccagtttctcattcatACACAATCACACtcacactgatctcccagtgaagcagctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttggGCTTTATtttggatcatcagtgaaactgagctgaagactgaccaGAGATTTACCCAAAATcctctgcaggtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgcgcacGCGTGCATGTTCAATGCTGTGTATGTCTGTGTCTGCACATGTGttcactgttgtgtgtgtgtgtgagagagagagagagagacttttttGACTTTTTGCAGCCTTTTTATTaccaaatcattttaaaacaatctCACATCAATTTATATACGAGGGAAAGGTATAATAAacgaaaatgtaaaataaataatcaagtcATAAATCTGACATCAGTGTGTCTGAGAACACGAGTTCTTCATCAAGAAAACACTTTCTCACATTTATCACATTATCACAACATCACTGCAGTTCAAAGATGTCCAATGTGCTCATGTGTTTATAAAAAGCATTCTCTGTTACAGTTCGGGATTTGAACATTCACACAATTTCTTGATCTCCTTTTGatccatttgttttttttctcgtAACATAAATGGCAAATTTTGCAGAACCAACCATCAAATGAATCCACTGACATTGAACTTTTCTCCTCCAGCTATGTTTGTACCCAGGAATAAAATCTCTTTCTGTAAATAACACCTTAAGGAAACCaaacatttactcattcattttcttgtcggcttagtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcaagtttttacgcagcggatgcccttccagcagcaacccatctctggaaaaggAAACCAAAGAGAatttctaaaacattaaataaataggaAAGTCTGTAGCGAAGCATAAAACAATGAGAAATtgcctctctctctttcaatATAAAGCAGACACATTTCACTGACATTAGGATTAGGCAGAGCAACAAAAGAACTGACTGCTATGGCCCCATGGAGTATCCTCCATTGAAGATCAGCCGCTCTTTTAGGTAATGCTGGTTAATAAAGGACATTCCATACTGGCtttgttcattcagtcatttcTAACTTCTCTCTCCACACAGTATCACTtctatttttacacatttagcGTTTGACACTTTAACAATGCTTTTGAACAAAGCTTTTCCTTttactgaaaaaaatctgttcatcAAGATCCATCTTCAACAAGACACTAGTATAATCTGTACTAGACAATCTGGGGTGATACCAATATCAGGAAAACAATCTTCAGTCTGGAAGCAAACATTTCACACATTATATTCCTCAAGTACATTATTTTCTTGCACatttaaaagcttatttattttacctaaaaATGTTTAGTAAAGAGTACAGATTTTACCCCTAAAACAGTTGACATTGTGTCCACATCCCTAAAATCAGGGCCTGTATTATTCACAATATGTTTCATTTGTAGAAATGTGTTTTTCTGCAGCATATTCATAAGACCTAGTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000188473

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058256 lncRNA downstream 21019 33698726 ~ 33699784 (-) True XLOC_028914
TCONS_00058255 lncRNA downstream 273989 33417548 ~ 33446814 (-) True XLOC_028912
TCONS_00058254 lncRNA downstream 301217 33417548 ~ 33419586 (-) False XLOC_028912
TCONS_00058253 lncRNA downstream 585165 33128015 ~ 33135638 (-) True XLOC_028905
TCONS_00058252 lncRNA downstream 823670 32758196 ~ 32897133 (-) True XLOC_028902
TCONS_00055973 lncRNA upstream 33324 33796692 ~ 33808943 (-) False XLOC_028916
TCONS_00055974 lncRNA upstream 42965 33806333 ~ 33808943 (-) True XLOC_028916
TCONS_00057370 lncRNA upstream 196007 33959375 ~ 33961465 (-) True XLOC_028917
TCONS_00055977 lncRNA upstream 595807 34359175 ~ 34361549 (-) False XLOC_028920
TCONS_00055978 lncRNA upstream 597406 34360774 ~ 34362421 (-) True XLOC_028920
TCONS_00055969 mRNA downstream 195584 33524237 ~ 33525219 (-) True XLOC_028913
TCONS_00055968 mRNA downstream 315320 33399196 ~ 33405483 (-) True XLOC_028911
TCONS_00055965 mRNA downstream 349169 33364466 ~ 33371634 (-) True XLOC_028908
TCONS_00055964 mRNA downstream 389122 33310760 ~ 33331681 (-) True XLOC_028907
TCONS_00055963 mRNA downstream 531733 33179367 ~ 33189070 (-) True XLOC_028906
TCONS_00055980 mRNA upstream 680282 34443650 ~ 34459618 (-) False XLOC_028922
TCONS_00055981 mRNA upstream 680414 34443782 ~ 34459615 (-) False XLOC_028922
TCONS_00055982 mRNA upstream 685998 34449366 ~ 34455848 (-) False XLOC_028922
TCONS_00055983 mRNA upstream 685998 34449366 ~ 34460301 (-) False XLOC_028922
TCONS_00055984 mRNA upstream 685998 34449366 ~ 34480611 (-) False XLOC_028922
TCONS_00055967 other downstream 328882 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055966 other downstream 330419 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055943 other downstream 1463073 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055942 other downstream 1464368 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055912 other downstream 2493176 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055975 other upstream 203549 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055976 other upstream 204842 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055986 other upstream 789699 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055991 other upstream 1469929 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055992 other upstream 1971638 35735006 ~ 35735169 (-) True XLOC_028934

Expression Profile

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