RNA id: XM_036968363.1


Basic Information

Item Value
RNA id XM_036968363.1
length 3362
RNA type mRNA
GC content 0.46
exon number 14
gene id ppp3ca
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33066905 ~ 33205175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAACTGAAATACACTACGGCTCATACTAGCAGCTGAGAGAACTGGGCACCGCATCACTTCTCCGAAGAGCTGTGATGCATTGCAAACGTCCGCCCACGCTACATCCGCTGGAAGccgtgagacagCCGTGCCCTTCCCCCTGAGTCATCGCCTCACGTTGAAGGAGGTGTTTGACTGTGAGGGGAAGCCCAGGGTGGACCTGCTCAAAGCCCACCTCACCAAGGAGGGCCGCGTGGAGGAGGCCGTGGCACTACGCATCGTCAACGAGGGCGCCGCCATCCTGCGCCAGGAGAAAACCATGCTGGACATAGAAGCACCAGTCACAGTGTGTGGGGACATCCATGGGCAGTTTTTTGACCTTATGAAGCTGTTTGAGGTGGGTGGCTCACCGGCTACGACGCGGTACCTCTTCCTGGGAGACTATGTGGACCGGGGATACTTCAGTATCGAGTGTGTTTTGTATCTTTGGTCGTTGAAAATCCTCTACCCAAAGACGCTATTTTTACTGCGAGGAAACCACGAATGTAGACATTTGACAGAATACTTCACCTTCAAACAAGAATGTAAAATCAAGTACTCGGAGCAAGTGTACGATTCATGTATGGACGCTTTTGACTGCCTTCCCCTGGCTGCCCTCATGAACCAGCAGTTCCTGTGTGTCCACGGAGGACTCTCACCAGAAATACACACCTTAGATGACATAAAGAAGATAGACCGGTTCAAGGAGCCTCCAGCGTTTGGGCCCATGTGTGACCTACTGTGGTCTGATCCTCTGGAGGACTTTGGCAACGAGAAGACCCAGGAATTCTTCAGCCACAACACAGTCCGAGGCTGCTCCTACTTCTACAGTTATCCAGCTGTATGTGAGTTCCTACAGAACAATAACTTATTATCAGTCATCCGAGCACATGAAGCACAAGATGCTGGCTACCGCATGTACCGGAAGAGCCAAACCACCGGCTTCCCCTCCCTCATCACTATCTTCTCAGCGCCAAACTACCTTGACGTTTACAACAACAAAGCTGCAGTACTGAAGTATGAGAACAACGTGATGAACATCCGGCAGTTCAACTGCTCCCCTCATCCCTACTGGCTGCCCAACTTCATGGACGTGTTCACCTGGTCCCTGCCGTTTGTGGGGGAGAAAGTCACAGAGATGCTGGTGAACGTGTTGagcatctgctctgacgacgagctcatgaaCGACGGAGACGACCAAGAGATCTTAGATGCCAACGCAGCTGCAGCTCGGAAGGAGGTGATCAGGAACAAAATCCGCGCCATTGGGAAAATGGCCACGATGTTCAAAGTGCTTCGGGAGGAGAGTGAGAACGTGTTGACGCTGAAGGGTCTGACGCCTACTGGCATGCTGCCCAGCGGTGTGCTCTCCGGGGGCAAACAGACCCTACAGAGTGCCACCACCGAGGCCATTGAAGCAATCGACACAGAAACTGAGGATGGAGAAGCCATCCGTGGGTTCTCTCCCCAGCATAAGATTGCCAGCTTCGAGGAGGCCAAGGGCCTAGACCGTATCAATGAGCGCATGCCTCCCCGAAGAGTCGGGGTCAACCACGTGGGACAGTCCATGGGCAAGATGAACATGTCCGAGGCCAACGGCACGGAAGACAATGACAATGACAACAGCAACAGTCAGTGATGTTTCGCCCCACGGCCCGCCCCAGAGTCCATGTGACTGCCTTGCTGTGCGCCAAGACATCGCCAAATCGTGATATCAGGCCTCAGAATATAGACATAACAtaacacacccacagacacaacacaacatctgCATCTACCGCCTGCTGCTCTTTCATCCAATTAgagaaacaaatcaaatgttacatCTCGTTCAAATTGGTGGTTTATTTTTTATACGCCAGGTCCCCACAAAGGGAAGGGAGTGGGGCCAGAGCTTAggacaggggggaggagaggaggccagcGGGGCGGGATGTAAGGGAACCTGTTGGGATGAGGGCCAGGGGTGTGGTCCTGTGGGCATGTTTGTTGTTCCCGCTCTCAATCCACTCACAGACCAAGAGGGCAGGGTTTGGAGTCCCACGCGTTCTCCCATGTCTGTTACAGTACGTCCTCATGGGGTCTGACACAAGACACTCTTGTACAGTACCCATGTCACACACACATGTTACTATTTCGAATCAGAGTTTCATTCAAGATCTCATCTCCTACAGAAATGATCTCGCTAGTCAACATGTTTTGCTACTAGTATTAATgaatacaaatttaaaaaaatactaaatcTTGTTTGTAAGAAAGGACATTTGAAAATGAAAAATATGTAGATTTTACTACTTGCAATGCGATCTTACCTGAAAACTCTTCTTTCTTGATTTATTTTGTGGTAAGATGCCATGAGCCTGCGGGGGAAGGGGTAGAGGTGGAACATGGGCTTGACTGTGGCCTCTCCACCAACCAAAGCCACAGTCTGTCATGTTTAGGTGCTGCAGTCCCAGCTCTGGGTCTACCTTCTGTCACCCTCTACCTGATTGTTTCTCACCTGCCTGTAACTAAAGAGAGAATGCACATAGAACGTCAAATCTTCTGTTGCAGTAAAAAAtgatctaaaatatatatatatataaggaatTATAAAGATGGACAATAACGAAAACAACGTTTTTTTAACAGCATCCACGGTATGGAACGCATCGGTGCATGCAATTAAGTTCCTTATTGATATGTGAAATTATAATTGTGATGTTTCAATATAGTAGacttgaattatttatttcatcaaattttatttgtaaaGTTCCCCTTTGTTTTATATATAATCATTTTTTATTCTTGCTTCCtttgattattattttttcatttttttcatcaATATTTGGAGTTTTTTATATTACTCTTGATTTATTTAATTGGATTGTTTTGCTGTACAGGCAGATATGCTCTTTTTAAGGTGTGAAGCCTTTTTCTGTTCTGTTGGTGTACAGAAGTTGTTCAATTGTGTGAATGAACATATTACTCAGTGAAAAGCAACATTCAGGCTGCCAAAGCATGATCGCATGGTTTGTTCAAATGTAAACAAATTGGACACAATGAAAATCCTGTCTCACTTCCTTTTAAAAGGAAAACACTATATTCTCATTATAATTCTTGATGATATTGGTATTATTCTCACGATTAAGCTTAAGGTTATTTTTTCCTTCCACTGTTTTCTGATCCTTGTTTGGTCTAGACGTGGTTTATTTTGAAGAAGGAATTTTATGAATTTTGTGACAATTTTTTCTTGTAATTTTTTTGGGGCCATTTGACTTCATAAACACATTGTAAGCATGCCCTATGGGACAAATCACGTTTTTTACTCTTGAATAAAATATGCATGAACCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2487898 lncRNA downstream 4477 33060099 ~ 33062428 (-) True G2176615
TU2487897 lncRNA downstream 6454 33058769 ~ 33060451 (-) False G2176615
TU2487890 lncRNA downstream 8810 33055173 ~ 33058095 (-) True LOC110510107
TU2487872 lncRNA downstream 27755 33038944 ~ 33039150 (-) True G2176596
TU2487806 lncRNA downstream 73037 32993625 ~ 32993868 (-) True G2176552
TU2488078 lncRNA upstream 1780 33198499 ~ 33200887 (-) True G2176734
TU2488099 lncRNA upstream 43550 33240269 ~ 33240488 (-) True G2176753
TU2488106 lncRNA upstream 48066 33244785 ~ 33245009 (-) True G2176760
TU2488125 lncRNA upstream 58215 33254934 ~ 33255405 (-) True G2176775
TU2488128 lncRNA upstream 60692 33257411 ~ 33257670 (-) True G2176778
XM_021591445.2 mRNA downstream 407 33062451 ~ 33066498 (-) True ecscr
XM_036967591.1 mRNA downstream 8748 33040945 ~ 33058157 (-) False LOC110510107
XM_036967592.1 mRNA downstream 8748 33040945 ~ 33058157 (-) False LOC110510107
XM_021591443.2 mRNA downstream 8753 33040945 ~ 33058152 (-) False LOC110510107
XM_036968302.1 mRNA upstream 129991 33326710 ~ 33390385 (-) False zgc:100829
XM_036968303.1 mRNA upstream 129991 33326710 ~ 33390385 (-) True zgc:100829
XM_021591456.2 mRNA upstream 229900 33426619 ~ 33434693 (-) True puraa
XM_036967713.1 mRNA upstream 418799 33615518 ~ 33617217 (-) True LOC110509437
XM_036968091.1 mRNA upstream 423324 33620043 ~ 33625931 (-) False slc22a6l
TU2487607 other downstream 422333 32643402 ~ 32644572 (-) True G2176363
TU2487111 other downstream 633264 32431949 ~ 32433641 (-) False cpi1
TU2489160 other upstream 314577 33511296 ~ 33512326 (-) True G2177695
TU2489480 other upstream 924763 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 1142192 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 1606472 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 1606472 34803191 ~ 34809303 (-) True G2178372

Expression Profile