RNA id: XM_036968302.1


Basic Information

Item Value
RNA id XM_036968302.1
length 4914
RNA type mRNA
GC content 0.46
exon number 8
gene id zgc:100829
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33326710 ~ 33390385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCTTtagggaaaaaaagaaaagaggCTGAGTTTGAGGAGGAGAAATGTGAGGAGTAAAATCACAATGTGCAATTACATTTTttgaaaaatctatatttttaatAACTATACAATTGGTTGGGCAATAGAAACATGGTTTTCAAACAGCAGCTTGTTTTCATTTATCTCTGCCTAACAGGATGCTGTTACTACATTTACAGCTAGGGTAACTGAGCTCTGTTTCctgactttcttttttttcaccaagataattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacggagagagagtgagagacagttcATGGAATGCTGTGATGTCATCAGCTCAGTCATACACAAAGGCAAGGAGGAGGACACACAAGCACACTCGCTCGAATAGTTACTCTGCTGTGGAGCATCTGCACCCCCACTAGTCTCCCAGTGATGGCTGCCTGACGAGGGCTGACGACGAATGACGTGTGAGTGTCGAGGGAGGAGGAAGTGTCAGCTCAGAGGACGACAGAGGAAGCAGTcttcagcttgtgtgtgtgtgtgtgtgtgtgtgtttgtgacagaCGAGCCCCgatcttcttcttctcctcatgAGGCTCGTTTAGAAACCAACTCATCTTCAGGAAACTGTTGGCTTAAGGAGTCAGGACAGTACCCCTCCACCTCCAGCCCACCACCGCCGCCACCATGCTGCAGCAGATCTTAAAGGACATGTACATTGACCCAGATGTGTTGGAGGCCCTAAATGAGGACCAGAAAAAGACCCTGTTCCTGAAGATGAGAGAGGAGCAGGTGCGGCGCTGGACAGAACGTGAGGAGAAAGAAGCGGACCATAGGCCAAAGTCAAAGACAGCCAACAGTAAGAAAGTGAGCTGGTTGCTGGGCAGGGACGGCGATGTGGCGGTCATGACGATTGGAGAGGTGGATGAGCTGAAGACCTCCAAACTCATCTGCACTGGGCCTGCGGAAAGAAGAGCACCACCAAGCCTGCACAATAACACACTcCACCAGACAACTTCCCTGAAGAGCAACCTGGTAAACAGACCAGCCTCAGAACCTGTCAGAACTCGGAGAGAGGATCTGCCTCCCAAAACACAGTCAGGGATACAACTCAAtttaaagGAGAACAGTGAGGAAGTGAAGACATTGCCCCCTCTACAGGGGGCAGTGAGAGAGCAGCAGCCACCTGCAGCAGTGGAAAAACAGGCTGAGTTGGAGCAGGATGTAGAAGTAGGTGGTCCACAGGAAAATCCAGTCCTCCTGTCCTACAGACCTCACCCCAGAGCTGGCCCTTCCAACCTGAGGCTGGGTACCACACTGTCCTCTATCCCCAAGACCATCACACCGTCCTCTGTACCAAGCTCCACTCCATCCCCTGTCCCCACTGACACACCGTCTCATGTCCCCAAGACCATAACCCCTGTCCCTACCATCACACCGTTTTCTGTCCCCAAAACCATCACACCGCCTGCTTTCCCTAGCATCATAACACCATCCCCTGTAACCAACAGTGTCATACCATCTCCTGTCCCCAGCAGCAGTGTCACACCGTCTCCTGTCCCCAGCAGCAGTGTCATACCATCTCCTGTCCCCAGCAGCAGTGTCACACCATCTCCTGTCCCCAGCAGCAGTGTCATACCGTCTCCTATCCCCAGCAGTAATGCCATCAGAGCTGCTCTAGAAAAGAGCACTGCCAAATCACACGCTTCAGAGAAGACCGTCACACTGTCCCCTGTCCCTAGTTCCATCACACTGTCCCCTGTCCCTAGCCCCATCACACTGTCCCCTGTCCCTAGCCCCATCACACTGTCCTCTGTCCCAAGCAGTGTCAAAACATCTCCTGTCCCCAGTGTCtcaccctcccctgtccccagtACCACTTGGTCCCCTGTCCCCAGTACCACTCGGTCCCCTGTCCCCAGTACCACTCGGTCCCCTGTCCCCAGTACCACTCGGTCCCCTGTCCCCAGTACCACTCGGTCCCCTGTCCCCAGTACCACTCGGTCCCCTGTCCCCAGTACCACTCGGTCCCCTGTCCCTAGCATCTATACACCATCCCCTTTCCACAGGACCGTCACTCCATCCCCTGTGGCTAGCAGCACGGCCATAAGAGAGGCTCTAAAGAAGAGCACCACCAAAACACATGCTCCAGAGAAGAACACTGTCGCACCGCTGTCCGCTTCAACCAGACTCCACCCCCAGGAGACGCCCAGCAGCAGAGATATCCGTGTGATGGCAGCCTCTCGTAGGACCATGTCTGAGGATGTGGTGTCTGATGGGGGCGGGGACACCTGTACAGGGCGTGGCCGGGTGGCTCAGCTCATGAAGACCTTCAGTGTGACATGCCCCACCCCCTCCACACAGACCCCTCTCCCCCACGGCAACAAGCCCTCCATCCCCACCAAACCCAGCCACCTGCGTCTCGTTGCCAGCCCCTCACTCAGGTAATCCACAGGACAGGACCAGACAACCAGGCCCACCCCCTGTCCCCCATTCCATCCCCACCCAGGCCCCACTGGACATTGCTGGACATCCAGCCTGGGGCCTCAGCCACTGGGGACAGGCATGCAGGCCACATGAGTCTCTCAGGAACACAACCAAACGTTTGACTCGATTGCTATTACTCCAAAAGCAATGCAATGGTATAGAGATTTTAAAATGTTTACTTTTgtttactttttaaaaatgtttaccatgttttattttaaattgtacagtactgtaaattcTCTCTGTGGGAAAGGCAAACCAATAGCGTTGATCGTAAACAGCATCTTCCTTTGTATCCTGCTTTTGCCTTTTTATATTCACAAAGGTATTGGGTGGTTCCACTAATTAGATGCCTTTTGAGTAGTGTAACTACATTTTAGAATTATATgtcacctcattttaacattcggtcaatgttcaacttaataaaaaacatgttttcccatctcaagaggtaaAAGAAAATGACTATAGTAAGGCCTATTAAGTGCtgaataaagtaacagggttgacgacttcatcttaaatcagccataactcCCCTtgtgacagaggaatggaagctgtttgtgtgcaacagggacggccaattgaatgcaagcttcacaattttatattttttgttgccgtccaatgcagctgtttttaatctcaatatcaaatcatttctgggtaacagtgAAGTACCTTAATGTGATATATTTCAATTGAAATGGTCAACaaggaaacaaaaatagcttcttagcaaagaacaatttctcaagcaagaattttgctaggactgtctgggagtggtctgagtaggCTGGGGAGAATGTAAACCTAGccgcagagaggtttggaactctctttcttattggtctattaacaaatttaccggtgatgtcaccaggcaggccagaACGCCattccaccaaaacaggcagacattttaggtgttttttttttttcttcaaacatTTCTTATACTAAAATGGCACTTATCATCTTTTTCACggtttcacagtattattccatccTCAAAGTGTGGAAATATAAATAACATCACGTTTTGGACTGCACCAGGCCTCTAAAATATTTagagcctgtctgtctataggtaacagggttgatgctCGACCTGCTCAGttctccaccacaaaacaccagaaaatggccaatGACCATTAGATTTTCAAAGTTtctaaaacaatttttttttttaaagaatagttTTAGCATATTAAAATGAGATttcagttcatgtaacagacTTGACCTTAAAATGGACAGGTTTTCTTGACCTTTTAAAATGAAtaactaatcacatgaaataaataataatctttaGAAATGACTTtatcaaagcaacaaaataactagggcttagGGTTACGTGGGTTAAAGTCTAGAAGTTACAATcaaagcaagcaatgcagatgtagaagcacagtggctagaggGTGCATAGAGAgacatgtcaaaatgcagaaTGCAGAGAGCAATTTAGCAAGTCTTTTATTCATATTGGATTTATTGActtttccatgtggtctatattaaaaggCACATCATTTAATATAACCGGCTTTTAAAGTTCATTATTTGTGCACAATTCCTTAAAATATCCCTTATTTCATGGAACAACCCTATCATTGACCATATCATACCATGTATTCATTCACCTGTTGATATTGTTTCTGAAATATTATCATGTACAAATCCTACTTCATTGATACACTTATcatacaatacattcacaaagCCTGTACAATGCTATCAAGGTCATAACCTGTACTTGTGATCCCCAAAAGGTATGACAAATGTAAACTTGAATGACATAGTACATGCAGTAATATTTGTTTCTTCGTTATGAGGTGTTGGCTACTATATAGAGAGAAACTGTGCTCATGTTGACAGGGCCAAATAGCTCATACATAGCTGTCATGACCAAGGAGATGGGTGGATTACAGTATGGACAGACCGGTAGAACAGGATCAGTGAGGTGGTTCCTCCTTGATCCCTGGGAAGAGCCCTCTCCGCTCGTTTACTGCCACTTCTCCCATGACTTTAACCTGGCCAAAGCAGCACGGTGTGCGACTTACCTACCTGAGATGGAACAATGACTGTGTCAAATGCCTCCTCTCTGTGTCCCAGTGGACCAAACACTGGCAAGCCACACGGGCCATGCCAAATAATACTCCTCAGTTCTGGCAAGCCACACGGTCCATGCCAAATAATAATCCTCAGATCTTTGTTATTATTCTCTCAGTTTTCTGATTGGTTGcactctttgttgtttttttactgtGTTTATGGGGATGATCTATGTTGTCTTGTGTGATGAGTGTTGTCCTACATGGTGTGTGCTGCACTTTGTGTGTGATCTCAGGCCTGTGTGGCACAATCACAGCAGAACAATAAAATCATTTGACTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2488195 lncRNA downstream 1137 33325302 ~ 33325573 (-) True G2176845
TU2488191 lncRNA downstream 10926 33315458 ~ 33315784 (-) True G2176841
TU2488188 lncRNA downstream 12729 33313662 ~ 33313981 (-) True G2176838
TU2488183 lncRNA downstream 17910 33308477 ~ 33308800 (-) True G2176833
TU2488174 lncRNA downstream 22075 33304391 ~ 33304635 (-) True G2176824
TU2488261 lncRNA upstream 21874 33412259 ~ 33412489 (-) True G2176909
TU2488265 lncRNA upstream 24810 33415195 ~ 33415419 (-) True G2176913
TU2488270 lncRNA upstream 28628 33419013 ~ 33419605 (-) True G2176918
TU2489125 lncRNA upstream 68168 33458553 ~ 33459092 (-) True G2177667
TU2489137 lncRNA upstream 76966 33467351 ~ 33472908 (-) True G2177672
XM_036968363.1 mRNA downstream 129991 33066905 ~ 33196719 (-) False ppp3ca
XM_036968362.1 mRNA downstream 135124 33066905 ~ 33191586 (-) False ppp3ca
XM_036968361.1 mRNA downstream 135125 33066905 ~ 33191585 (-) False ppp3ca
XM_021591445.2 mRNA downstream 260212 33062451 ~ 33066498 (-) True ecscr
XM_036967591.1 mRNA downstream 268553 33040945 ~ 33058157 (-) False LOC110510107
XM_021591456.2 mRNA upstream 36234 33426619 ~ 33434693 (-) True puraa
XM_036967713.1 mRNA upstream 225133 33615518 ~ 33617217 (-) True LOC110509437
XM_036968091.1 mRNA upstream 229658 33620043 ~ 33625931 (-) False slc22a6l
XM_021591460.2 mRNA upstream 229658 33620043 ~ 33627270 (-) False slc22a6l
XM_021591462.2 mRNA upstream 229658 33620043 ~ 33627271 (-) True slc22a6l
TU2487607 other downstream 682138 32643402 ~ 32644572 (-) True G2176363
TU2487111 other downstream 893069 32431949 ~ 32433641 (-) False cpi1
TU2489160 other upstream 120911 33511296 ~ 33512326 (-) True G2177695
TU2489480 other upstream 731097 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 948526 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 1412806 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 1412806 34803191 ~ 34809303 (-) True G2178372

Expression Profile