RNA id: XM_021591462.2


Basic Information

Item Value
RNA id XM_021591462.2
length 3082
RNA type mRNA
GC content 0.46
exon number 11
gene id slc22a6l
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33620043 ~ 33627271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccccttCACTCACACTAAAATATAACCAATCAAGAAGTTGGGACATCTGTATATACAAAAGAACACtaagtgtgtgcctgtgtgtatgatGATGGTGTATGATGGTGTTGACTCTCCAGTGGACAAAGGATTAATGCCACACAGCAAGGACTCTCCTTTTCCCTCAGCGGTCCATGGAAAGAGTAGTTAAGACCTCGAGCGGTTTAACTGAGCAGGTTATAATCCAGAAAGAGTCTATTTCCTCAGAAAAACCATAGAAATTCCAGAGCAGATTAGCTAACAATGCGTAGCAAAAGCACTGTTTCTTTCCTGGTTAGATTTTTTGGCTGTTGTTAAAGGGAACTTTTTAAATATAATGTAACATATTGAAGTGAATGGTCTGAATGGACTCCATGGAATCTTGGTCTCTCTCTGAAAAAAAACTCTTGCTGTGAAGGCTGTGTTTGTTCACAGTAGGATGCTTGCTAAAATCTGGACTTTTCTTCAACAAAGGCAAGGCTGGTGCATAACGGAATCTATATAACAGCTTTTGTGTCTCAAGTGaagtatttgatttattttgaagTCAAACCTTTTAGATGTACTTTGTCCATATGTTCTATAATGGGAACAAACAGGTAGGCTACAAGTCTCATCAAGTGGAGAACAACATTTTTTAAACGTGTTTTTTTAACTTGAGTGTTTTTACTCGCTGGCATTTTTAGACGTGTTACAAAAGACGTTGAAGTGGAGAATCACATTCCTTGCTTCAGCAACTTCTCTTCTCAAGCAAACCCACTTCTAGTTGTGTCTCACAGCCATGGCCTTTGGAGACCTTCTAGAACAGGTGGGCAGCACGGGCCGCTTTCAGGTCCTGCATGTCACCTTGCTCTGTATGCCCATCCTTATGATGGCCAGTCATAATCTGTTGCAGAACTTTGTGGCCTCAGTACCCCCCCACCACTGCAGTGTCCACAGGAACCTGTCCCTGTCTAGTCTGAGCCCGGAGCAGGTTCTGCTGCTCACCGTGCCCCAGGACATTAAGAACAGCAGGCCGGCGAGATGCCTGCGCTATGCTGCGCCCCAGTGGCAGCTCCTGTCAGAGAATGGGACCTACAGTCCGAAGGTGAAGCGAGACAGTAGTAATGATACTGAAGACCTTCTAGATGCTGAGCTGCAGGGCTGTAAAGATGGATGGGAGTACAGCATGACAGAGATGAGTTCCACAATTATCTCTGAGTGGGACTTGGTCTGCGATCTTCGCTCGTTTAAGCAGATGGGACAAACCATTTATATGGGAGGGGTGCTTGTGGGAGCTGTAATCTTTGGGGGACTGTCGGACAGATTTGGACGGCGTTTCCTGCTGCTAATCTCCAACCTGTTGATGGCAGTGGGAGGGACGTGTGCTGCCTTCTCCACCTCATTCTCCGTCTTCTGCCTCTTCCGCTTCATCACTGGCATGGCCCTTTCTGGCCTGGGGCTCAACTCCTTCTCTCTCAttGTGGAGTGGATTCCCACAAGAGTGAGGACAGTGGTGGGTACAGGGACAGGCTACTGTTACACAATGGGTCAGCTGATCCTGGCAGTAGTGGCCTACTTCATTCGGGACTGGCGCTGGCTAACGCTGGCTGTCTCCGTACCTTTCTACATCACCTTCCTCTACTCATGGTGGTTCCTGGAGTCTGCAAGATGGCTCGTCCTGAACAGAAAGTCTGAGCAAGCGGTCAAAAATCTCAAAACAGTGGCCCGAATCAATGGACGCCGTGAAGAGGGTGACAGAATCAATCTTGAAATGCTGCAGGATTCCATGAAGAAGGAGATGTCCTGCTCACAGGGTTCCTACTCTGTAGTAGACCTGCTCCGCACGCCCACCATGAGGAACATCACCATCTGTCTCAGTGCTGTCTGGTTCTCCACCAGCTTCGCCTACTATGGTCTATCTATGGATCTGCAGAAGTTTGGCGTGGACATCTACTTGATTCAAGTGATATTCGGAGCGGTGGACATCCCTGCCAAAGTAGTGGTTACAGTGTCCATGAGTATATTTGGGCGACGGCCCTCACAGTGCGCTGCACTCATATTGTCTGGAGTCACCATTTTGATCAACATATTGGTGCCAAACGAAATGCAGACAGTGCGCACCACTCTAGCCGTGCTGGGTAAGGGGTGCCTGGCCGCGTCATTCAACTGCTGCTACCTCTACTCTGGAGAGCTGTACCCCACCATCATCCGGCAGAATGGCATGGGCTGGGTGTCCATGATGGCTCGTGTAGGAGCGATGGTGGCCCCCATGGTGCTGCTCCTTGGGGAGGCTGTCCCGTGGCTGCCTGGCTTCATCTATGGGGTAGCCCCCATCTTAAGTGGGGTGGTCGCCATCTATCTGCCAGAAACACTTGGTGCACCACTACCCGACACTATCCAGGATGTGGATGAGAGaAGTTGCAAGAAAACAATCCTCAATGCCTCGCCCAAGAAGGAGGAGCTGGACATGTTAGATACCCATAATACCCTGTTCAAGGAAGCTGCCTGAAGACTCATCAAATGTTACTGACCTTGCCTGTATAGTCTAAATAGATACTACAGTTGCTTGCTCTACAGTTTTTTCACAAAGACTGTAAGGTAGCAATCAATATTTTAACTGGTCCACTGGTGTAGGAGGAAATTACCATGATTTGTGAGCTATGAGCTACGTAGAATAATGAAATGATCTGCTGTGGTACACTGTGGTCTGTTTAACATTTAATATTTCAACAGTAAAACATGAATTAATGCTAGATTGTGAGTAAATAAATATATGCTACAGTATATTGTGTATTCTAACTACAACTTTATTTGCATCTTTCTATGGGCCAGGCCTATATTTTTATGTTCTATACTAGTATGCATTCCTTAAAATAATGACAAAGTTATCCTCACCTTCGATCAGTATGATCAGTATGAATGGTCTTCGCCATGTGGCTATATTGTTTGTGACTGTGGCACAATTTCCGTTACAGTCCATGAAACTGGTCATCTTGACTGGGCATGGTATTTGTAGCTGGAATCGGTTTGTGTAgcttaggcctacagtatatcaggTAGAAAATAAAATGTCAGATGTT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08203 SLC22A6, OAT1; MFS transporter, OCT family, solute carrier family 22 (organic anion transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489224 lncRNA downstream 9757 33608940 ~ 33610286 (-) True G2177757
TU2489215 lncRNA downstream 22362 33595998 ~ 33597681 (-) True G2177748
TU2489202 lncRNA downstream 44263 33575504 ~ 33575780 (-) True G2177735
TU2489193 lncRNA downstream 56076 33563745 ~ 33563967 (-) True G2177726
TU2489192 lncRNA downstream 56435 33563317 ~ 33563608 (-) True G2177725
TU2489250 lncRNA upstream 35116 33662387 ~ 33674183 (-) False G2177781
TU2489251 lncRNA upstream 37708 33664979 ~ 33666446 (-) True G2177781
TU2489287 lncRNA upstream 113445 33740716 ~ 33741497 (-) False G2177816
TU2489288 lncRNA upstream 113914 33741185 ~ 33741839 (-) True G2177816
TU2489292 lncRNA upstream 118957 33746228 ~ 33746627 (-) True G2177820
XM_036967713.1 mRNA downstream 2826 33615518 ~ 33617217 (-) True LOC110509437
XM_021591456.2 mRNA downstream 185350 33426619 ~ 33434693 (-) True puraa
XM_036968302.1 mRNA downstream 229658 33326710 ~ 33390385 (-) False zgc:100829
XM_036968303.1 mRNA downstream 229658 33326710 ~ 33390385 (-) True zgc:100829
XM_036968363.1 mRNA downstream 423324 33066905 ~ 33196719 (-) False ppp3ca
XM_036967490.1 mRNA upstream 10866 33638137 ~ 33651127 (-) True pygma
XR_005040384.1 mRNA upstream 465038 34092309 ~ 34093015 (-) True LOC118945276
XM_021591473.2 mRNA upstream 536913 34164184 ~ 34171974 (-) False si:dkeyp-50d11.2
XM_021591474.2 mRNA upstream 536926 34164197 ~ 34171975 (-) True si:dkeyp-50d11.2
XM_036967457.1 mRNA upstream 591362 34218633 ~ 34226731 (-) False LOC110510130
TU2489160 other downstream 107717 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 975471 32643402 ~ 32644572 (-) True G2176363
TU2487110 other downstream 1186402 32432047 ~ 32433641 (-) False cpi1
TU2489480 other upstream 494211 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 711640 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 1175920 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 1175920 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 2334713 35961984 ~ 35962832 (-) True G2179862

Expression Profile