RNA id: XM_036967490.1


Basic Information

Item Value
RNA id XM_036967490.1
length 4171
RNA type mRNA
GC content 0.50
exon number 20
gene id pygma
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33638137 ~ 33651127 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATGACCCATCCATGTGGGTGCTTCTGTAGTCGTATCTGAACTGGCTGGACGTGCACCTGAAGTTGTATTGGAACAAGGAAGCCAGGGGTAGAGCATCATGTCAAAACCATTTTCAGACCACGATAAAAGGAAGCAGATCTCCGTGAGAGGTCTTGCTGGTGTGGAAAATGTCGCAGAACTGAAGGTCGCTTTCAACAGGCATCTCCATTTTACACTGGTCAAGGACAGAAATGTGGCAAACAAACGGGATTACTACTTTGCTCTCGCCAACACCGTGCGCGACCACTTGGTGGGCAGGTGGATCAGAACCCAGCAGTACTACTATGAGAAAGATCCCAAACGTGTGTACTACATCTCCCTGGAGTTTTATATGGGTCGCACCCTGCAGAACACTATGGTGAACCTGGCCCTGGAGAACGCTTGTGATGAGGCCATATACCAGCTGGGTCTGGacatggaggagctggaggacatGGAAGAGGATGCTGGCCTGGGAAATGGTGGTCTTGGCCGTCTTGCCGCATGCTTCCTGGACTCAATGGCTTCTCTAGGCCTTGCTGCCTATGGCTATGGTATCCGCTATGAGTTTGGCATCTTCAACCAGAAGATTGTCAATGGCTGGCAGGTTGAGGAGGCCGATGATTGGTTGCGTTACGGAAACCCCTGGGAGAAGGCCCGCCCTGAGTACATGCGCCCCGTCAAGTTCTATGgcaggaccgagcacaccccagATGGTGTGAAATGGGTTGACACTCAGGTAGTGTTGGCTCTGCCATATGACACCCCTATTCCCGGCTACAGGAACAACATTGTCAACACCATGAGACTGTGGTCTGCTAAGGCCCCATGTGACTTCAACCTGAAAGACTTCAACGTTGGTGGCTACATTCAGGCTGTGTTGGACAGAAACTTGTGTGAGAACATTTCCCGCGTGCTGTACCCCAACGATAATTTCTTTGAGGGCAAGGAGCTGCGTCTGAAGCAGGAGTACTTTGTGGTGGCCGCCACTCTGCAGGACGTCGTCCGTCGTTTCAAGGCCTCTAAGTTTGGCTCCAGAGAGGTCGTCCGCACAGACTTTGCCGAGCTACCAAACAAAGTTGCCATCCAGCTGAATGACACTCACCCTGCCATGGCTATTCCTGAGCTGATGAGGgtcctggttgatgaggagaagCTGGGTTGGGACAAGGCCTGGGACGTGTGTGTCCGTACATGTGCCTACACAAACCACACTGTGCTGCCTGAGGCCCTGGAGCGCTGGCCCATTGACCTGTTCCATCACCTGTTGCCCCGTCACCTGGAGATCATCTTCGAGATCAACCGTCGCTTCATGGAGTACGTTGCCTCTAAGTTCCCTGGAGACCACGACCGTATGCGCCgcatgtccctgattgaggagGGAGGATGCAAGAAAGTCAACATGGCTCATCTGTGTATCGTTGGTTCCCATGCTGTCAACGGCGTGGCCCGCATCCACTCTGAGATCCTCATCGCCACTCTGTTCAAGGACTTCTATGAGTTGGACCCACACAAGTTTCAGAACAAGACCAATGGGATCACCCCCCGTCGCTGGCTGGTTATGTGCAACCCCGGCTTGGCGGAGGTCATCGCAGAGAAAATTGGAGAGGAGTTTATCCGTGACCTTGACCAGCTTAAGCGACTGTTGAAGTTCATTAATGATGATGCTTTCATCcgtgacatcgccaaagtcaagcaGGAGAACAAGCTGAAGTTCGCTGTGCACCTGGAGGAGCACTACAAGGTCAAGATCAACCCCCAGTCCATGTTTGACTTCCAAGTCAAAAGAATCCACGAGTACAAGAGACAGCTGCTCAACTGTCTGCACATGATCACCTACTACAACCGTATCAAGAAGGAGCCCAACAAGCACTGGACCCCAAGAACCATCATGGTCGGAGGAAAGGCTGCACCAGGCTACCACACAGCCAAGATGATCATCCGTCTCATCACAGCTATCGGTGAGGTTGTCAACCACGACCCTGTTGTCGGCGACCGCCTCAAAGTCAtcttcctggagaactacagAGTCACCCTGGCTGAGAAAGCCATCCCCTCTGCCGACCTGTCTGAGCAGATCTCTACAGCTGGCACCGAGGCCTCTGGCACTGGTAACATGAAGTTCATGCTGAATGGTGCTCTGACCATCGGCACCATGGATGGAGCCAACGTGGAGATGGCCGAGGAGGCCGGAGAGGAAAACCTCTTCATCTTCGGTATGAGAGTGGAGGATGTGGACGCAATGGACGCCGGCAAAGGATACCATGCCTCTGAGTACTACAACCGTATTCCCGAGCTGAAGCAGGCCATGGACCAGATTGCTGGCGGCTTCTTCAGTCCCAAGCAGCCTGACCTCTTCAAGGAACTTGTGGACCTGCTGATGCACCACGACAGGTTCAAGGTGTTTGCTGACTACGAAGCCTACATCAAATGCCAGGACAAGGTCAACCAACTGTACAAGAATCCCAAGGAATGGACCAAGATGGTGATCCATAACATTGCGGGCTGTGGTAAATTCTCCAGTGACCGCACCATTGCCCAGTACGCCCGAGAGATCTGGGGCATGGAGCCCAGCCTGGAAAAGATCCCTGCCCCCGATGAGAAACTCAAATAAGCTGTCCGTCCAATCCCATCCCCACCACTTACCCCATGCTACTGCTGTTAGGAGAGAAGCACCATTAGATACGTCTGAGGAGAATGGCAAATAATTTCTCAAAGCACTTGAATGACTGTAATGATTGATGCCTGTCTAATTTGTCTCATACACAGAGTTCTGGCTATTCACACGGCTCAAACCTTATTGTGACAGGTCTTGAGACCAGAATAACAATAAATGAAGCAATGCCTTCTGTTTTGTAAAAATAGAGAGGTGTATTTACGGGTGTTCGCTGTTCCGTCACTAATCAGACCGTGCAGGTAGTTACAATCTAAACTGCTGTTGAGGCGAAGACATGAGTTGTGTGGTGGGTTTTGTGTTTGGTTGTGCATTctggagtttatcaaaatgtatGTAGGCTTGGATCCATTCTGAATGAGTTCCTGTGGTCTGAAATGCAAGAGTAGGTTGAGCTGTGTGTTTTTTCTCTTAGCTTGAATGCTGTCAGTATCATGCATGCATTCTCAAAGCATAGACTCTAGTCCATGATGAGAACAATCATTCTCTTAGGGTACTGCCATGACCGCGCTGTGTTTGCCCCTCTTAGCGGACAATAGACACTGGCCCTGATCAGACAGCTCAGAGTGTCTGCTCTTTTCTGTCCATAAAATGACATGGATGGGTTTGCCCCTCTACATCCCATCTACCTTATATGTATGGCAGTGTTGACTGGTGAGGGTAGAAcgtctcataataatggccgcAACAGACTGGATGGAATGGcttcaaacatatggaaaccatgtgtttgatgtagttGATACCATTCCAGATATTCTGCCCAGACATTAAaacaagcccgttctccccaattaaggtgccagcaACCTCCTGTGATGTATGGTGCCTAACCCTCTGAGGGGACACTGCATCAGTATGTTGTCTGAATCTCCCACAGAAgggttgctgaggggaggacggctcaaaaTAATGACTGGAAGGGAGTGACTGGAATGGAGTGACTGGAATGGAGTGACAGGAATGGAGTGACAGGAATGGTATCaacaacatggaaacaatgtgtttGATACTATTCCGTTCCAGCCGTTACTACGAGCGTGTCCTCCCCAATGAAGCTGCAACCAGCCACCTGTGGATCTAgtctttttactttttaattgtGTAGAAAAAACAATGCTAAACAGCTTTATGTTTGTCAACTTGCGTATGTTTCGTCTTTACCTGAAGAAAATAACGTATCCATGTAGTCTATTTGAAGGCCTCTGAGGGCTAGCCTGGGAACCAGTGAAGCAGAGCAGCGGAGGGGTGGGATAACACAGCTGCTCCACAGTTGGAGGAAGCATGTCAGTGTTTTGATGTTGGAACCCACATTATGGCCTTGCCACCCTTTCTGAAACCCCAGCTCTCTGTTTGTTTCACCTTACGGCTGTCAATAATGCCAACTGTGGCCAACAAAGCCTCATCCTCCTACCCCATCTTTTCAGGATGTTCTAGTCTAGTTATACAAACACATTAAAGTATACTAGACACTAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489224 lncRNA downstream 27851 33608940 ~ 33610286 (-) True G2177757
TU2489215 lncRNA downstream 40456 33595998 ~ 33597681 (-) True G2177748
TU2489202 lncRNA downstream 62357 33575504 ~ 33575780 (-) True G2177735
TU2489193 lncRNA downstream 74170 33563745 ~ 33563967 (-) True G2177726
TU2489192 lncRNA downstream 74529 33563317 ~ 33563608 (-) True G2177725
TU2489250 lncRNA upstream 11260 33662387 ~ 33674183 (-) False G2177781
TU2489251 lncRNA upstream 13852 33664979 ~ 33666446 (-) True G2177781
TU2489287 lncRNA upstream 89589 33740716 ~ 33741497 (-) False G2177816
TU2489288 lncRNA upstream 90058 33741185 ~ 33741839 (-) True G2177816
TU2489292 lncRNA upstream 95101 33746228 ~ 33746627 (-) True G2177820
XM_021591462.2 mRNA downstream 10866 33620043 ~ 33627271 (-) True slc22a6l
XM_021591460.2 mRNA downstream 10867 33620043 ~ 33627270 (-) False slc22a6l
XM_036968091.1 mRNA downstream 12206 33620043 ~ 33625931 (-) False slc22a6l
XM_036967713.1 mRNA downstream 20920 33615518 ~ 33617217 (-) True LOC110509437
XM_021591456.2 mRNA downstream 203444 33426619 ~ 33434693 (-) True puraa
XR_005040384.1 mRNA upstream 441182 34092309 ~ 34093015 (-) True LOC118945276
XM_021591473.2 mRNA upstream 513057 34164184 ~ 34171974 (-) False si:dkeyp-50d11.2
XM_021591474.2 mRNA upstream 513070 34164197 ~ 34171975 (-) True si:dkeyp-50d11.2
XM_036967457.1 mRNA upstream 567506 34218633 ~ 34226731 (-) False LOC110510130
XM_021591476.2 mRNA upstream 567506 34218633 ~ 34226881 (-) True LOC110510130
TU2489160 other downstream 125811 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 993565 32643402 ~ 32644572 (-) True G2176363
TU2487110 other downstream 1204496 32432047 ~ 32433641 (-) False cpi1
TU2489480 other upstream 470355 34121482 ~ 34147319 (-) False G2177991
TU2489664 other upstream 687784 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 1152064 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 1152064 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 2310857 35961984 ~ 35962832 (-) True G2179862

Expression Profile