RNA id: TCONS_00057370


Basic Information

Item Value
RNA id TCONS_00057370
length 838
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_028917
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 33959375 ~ 33961465 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGTAATTAGAATAACCGAGACAAAACTGTGTTAAAATCAGttaaagttgatttttttttagtattaaagTATACATTTTTCTTATCTTAACATCCACAGAGTACTTTGACAGTTACCTCAGAATGTGCTGGGTCACTGTGTGTTGACCCACCAGATGACCTTCTAGGTTGAACGTCAGAAGAAGCCAAGGCAATAACTGATGAGGCTGATACAGGAGCTGATGAAGAAGACAAGGCAAGAACTGATGAGGCTGATacaggagccgatgaagaagccaaggcaggaactgatgaggctgatACAGGAGCTGATGAAGAAGCCGAGGCAAAAACTgatgaggctgatgcaggagccgatgaagaagccgAGGAAAAAACTgacgaggctgatgcaggagccgatgaagaagaaTGGCAaggaactgatgaggctgatgcaggagccgatgaagaagactggcaaggaactgatgaggctgacgcaggagccgatgaagaagactggccaggaactgatgaggctgatgcaggagcctcCAATAAAGAAGTCGACGCAGGAGCCTTCAACAAAAGGGGCTGAGTGGTTTCTTCAGCAGACCGCCTTTGTCCTCAACTGCTAaagaaggacaaaaaaaaaaaacacaatataggCAAAAGTCAGTGTCAAAGCAGCAAGAAGACAATCTCATCAGCACAGTGTTTTGATGTTGTGTTTCATTGATTATGCTATGGTACATAAACAATTAAAGACAATAATAAAGGGTTatacacactgcaaattttagattgtagatttaactaccttagagttcaaattaacactccctcagtgtttat

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0045165 cell fate commitment biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055973 lncRNA downstream 150432 33796692 ~ 33808943 (-) False XLOC_028916
TCONS_00055974 lncRNA downstream 150432 33806333 ~ 33808943 (-) True XLOC_028916
TCONS_00058256 lncRNA downstream 259591 33698726 ~ 33699784 (-) True XLOC_028914
TCONS_00058255 lncRNA downstream 512561 33417548 ~ 33446814 (-) True XLOC_028912
TCONS_00058254 lncRNA downstream 539789 33417548 ~ 33419586 (-) False XLOC_028912
TCONS_00055977 lncRNA upstream 397710 34359175 ~ 34361549 (-) False XLOC_028920
TCONS_00055978 lncRNA upstream 399309 34360774 ~ 34362421 (-) True XLOC_028920
TCONS_00055979 lncRNA upstream 427687 34389152 ~ 34390120 (-) True XLOC_028921
TCONS_00058257 lncRNA upstream 495628 34457093 ~ 34458495 (-) False XLOC_028922
TCONS_00057371 lncRNA upstream 525507 34486972 ~ 34494214 (-) False XLOC_028923
TCONS_00055971 mRNA downstream 196007 33720803 ~ 33763368 (-) False XLOC_028915
TCONS_00055970 mRNA downstream 196007 33720803 ~ 33763368 (-) False XLOC_028915
TCONS_00055972 mRNA downstream 196154 33722076 ~ 33763221 (-) True XLOC_028915
TCONS_00055969 mRNA downstream 434156 33524237 ~ 33525219 (-) True XLOC_028913
TCONS_00055968 mRNA downstream 553892 33399196 ~ 33405483 (-) True XLOC_028911
TCONS_00055980 mRNA upstream 482185 34443650 ~ 34459618 (-) False XLOC_028922
TCONS_00055981 mRNA upstream 482317 34443782 ~ 34459615 (-) False XLOC_028922
TCONS_00055982 mRNA upstream 487901 34449366 ~ 34455848 (-) False XLOC_028922
TCONS_00055983 mRNA upstream 487901 34449366 ~ 34460301 (-) False XLOC_028922
TCONS_00055984 mRNA upstream 487901 34449366 ~ 34480611 (-) False XLOC_028922
TCONS_00055967 other downstream 567454 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055966 other downstream 568991 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055943 other downstream 1701645 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055942 other downstream 1702940 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055912 other downstream 2731748 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055975 other upstream 5452 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055976 other upstream 6745 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055986 other upstream 591602 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055991 other upstream 1271832 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055992 other upstream 1773541 35735006 ~ 35735169 (-) True XLOC_028934

Expression Profile

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