RNA id: XM_021591474.2


Basic Information

Item Value
RNA id XM_021591474.2
length 3017
RNA type mRNA
GC content 0.50
exon number 22
gene id si:dkeyp-50d11.2
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34164184 ~ 34171975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTATATGGGTAGGAGTGTACATCTTTAGAATGTACGGTGTCATGCACTATTTACGGCTAAAATCACACATTGCAATTTACTGTAAATAATGAATATGGTACTTTACTGTTCGATTTATTGTGTCAAAATAACAACCTTTTACAGTGTAGGCCTACTTGGTTTTCGTGTTACTGTATGACTGATCTATTGCCACTAGATGGAGGCATTGTTACAGTAAAACAACTCAGCTGATGCCACTTTTGTGAAGTTATGTTGTAAACAGCAAAGAGGGGATTCACAGAAACATGTACATTAAAACGACTTCATATCTTTACGTGGTCCATGCTTATTCAGTGGCCTTAATTAGATTAATTGGACTGACAAATCCGTTTCAAATCAAGTTAAGCCACCTGCTAAATTGCATCTCATATCTTAGATTATACTTGGGCTATATAATATAATTTGGTGTGTGTATGGAAAAGCACCTCTCATCAAACACGTTTTCTTTTGTTGAATTCGCAAGATATGTGCTGAGTAATGCAAAATGCGTTGCGCAGGCCTAGAGGAATCTTCTATGGGACGGTCGGTGGGAGAATCTGGGTGGCAGCCAGAAAACCAACCCAGCTTTTAGTTCAATGAAGCACGGCGAGGCATTTCACCGTGGCGGTCAAAAAATCTCGGCGTAAACACGTCTCTTTTTTTTGAGTGGAGTTGAGGAGGAAGCTATGGAGCAGGTGATGGAGCAGGTTATTGAACGTGTGTTTGCCTCTGGAGTGGCTGCTCGTTTGAGGAGCCAGTGGGACCGCAATGAGGGCATCGGTCAGAATGACAAGGCCCTGAAGTTCTTAGGCCAAGACTTTGAATATCTCCGGTCCCACAGTCTGCAGAGCAGACGGCTGTTTGAGGATGATGCATTCCCTGCTCAGATCTCGTCGCTGGGCTTCAAGGAGCTGGGGTCACGCTCTACAAAGACACAGGGGGTCCGATGGATGCGCCCCACGGAGTTCTGCTCTGACCCTCACTTCATCGTAGACGGAGCCACTCGCACAGACGTCTgccagggagctctggGTGACTGTTGGCTGCTGGCAGCGATTGCTTCACTTACACTGAATGAGACTCTACTACATCGGGTGGTGCCCCATGGGCAGAGCTTCCACCAACAGTATGCTGGGATCTTTCACTTCCAGTTCTGGCAGTTTGGGGAGTGGATGGATGTGGTGATTGATGACAGGCTGCCAGTGAAGGATGGGAAGCTGCTGTTTCTCCACTCAGCAGAGGGGGCTGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTACGCAAAGCTCAATGGCTGTTACGAGGCCCTCTCAGGGGGCAGTACATCAGAGGGGTTTGAGGACTTCACAGGGGGCGTGACAGAGATGTTTGAGCTGAAGAAGGCCCATCCAGACCTGTTCAGCATAATCAGTAGAGCAGTGGAGCGAGGTTCCCTGCTGGGATGCTCCATAGATATCTCTGGTGTTTTCGAGATGGAGGCGATGACATTCAAGAAGCTGGTGAAAGGCCATGCCTACTCTGTGAcaggtgtggaggagGTGGAGTTTAAAGGAAGTCCCACCAAGCTCCTGCGGATCAGGAACCCctggggagaggtggagtggaccGGAGCCTGGAGTGACaaTTCAAGAGAGTGGGCTGGAGTTGACCCATCGGTCAGAGCTAGATTGTACAACCGTAGCGAAGATGGCGAGTTCTGGATGTCCTTCCGTGACTTTCTGCGTGAGTTTAGCCGTTTGGAGATCTGTAATCTGACAGCAGACGCCCTGCAGGCCAGCCAAGTGAAGAAGTGGAGCTCAACGCTCTACcctggagagtggaggagaggcagCACTGCAGGGGGCTGCAGGAACTACCCAGCAACGTTCTGGCTCAACCCTCAATTCAAAGTGGCCCTTCAGCACCCAGACACAGATGGCCAATCAGGTTGCAGCTTCCTGGTGGCGCTGATGCAGAAGGATCGTCGTCGGCAACGGCGTGAGGGGAAAGACATGGAGACCATTGGATTCACCATCTATGAGgTTCCAGAAGAGTTTACGGGTCGGGCCGGGGTGCATCTAAAGAGGGACTTCTTCCTGACCCACGGCTCCAGTGCCCGGTCAGAGCTCTTCATCAATCTGAGAGAGGTCAGCACCCGCTTCTGCCTGCCCCAGGGAGAGTATATCGTCATCCCCTCCACCTTTGAGCCCCAGAAGGACGGAGACTTTGTGCTCAGGGTGTTCTCTGAAAAGCCAGCTGACTCCCAGGAATTGGATGATGACATCACAGCTGATCTGCCTGAGGAGGTAGAGCTGGACGAGAGCCAGATTGATGCAGGCTTCAAGGGTCTCTTCAGACAGCTTGCTGGAGCGGAAATGGAGATCAGTGCCACCAAGCTTCAGACCATCCTAAACAGAATCATCAGCAAGCATAAGGACCTGAAGACAGACGGCTTTGGCAAGGAGGCGTGTCGTTGCATGATAACTCTCATGGATACCACCGGCACTGGGAAGCTGGGCTTGACAGAGTTCCATGTGCTGTGGGAGAAGATCAAACGGTACCTGACTGTGTTCAGGAAGTTTGACCTGGATAAATCTGGCACCATGAGCTCCTATGAAATGCGGATGGCACTGGAATCAGCTGGCTTCAAGTTGACCAACCACTTGTTCCAACTCATCATCCTACGCTACGCAAAGGAAGACCTGAATGTGGACTTTGATAACTTTGTCAACTGTCTCATCCGTCTGGAGACCATGTTCAAGACCTTTAAAGAAATGGACACTGATGTAGATGGGGTGGTTTCCTTCAGCTTCTTCCAGTGGATCTCCCTCACCATGTTTGCCTAGACAGATGGATGGCCTTGGCCTGCTACTGCTTGTGTTGGTGGCGTCACCCCGACTCCAACGGCCATAGAATATGGTCTTAAATGTGACAAAGTTGTGGTTCTAAAACAGGTAGAGGAGAACACAAATGCTTTTGAATGTTGCCTGTGCTTGACTTTCATtttataaaaatattt

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K01367 CAPN1; calpain-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489476 lncRNA downstream 7311 34092047 ~ 34156886 (-) False G2177991
TU2489475 lncRNA downstream 16878 34143714 ~ 34147319 (-) False G2177991
TU2489360 lncRNA downstream 300074 33863704 ~ 33864123 (-) True G2177880
TU2489356 lncRNA downstream 304822 33859020 ~ 33859375 (-) True G2177876
TU2489352 lncRNA downstream 308337 33855576 ~ 33855860 (-) True G2177872
TU2489557 lncRNA upstream 21032 34193007 ~ 34193272 (-) True G2178061
TU2489554 lncRNA upstream 22491 34194466 ~ 34195193 (-) True G2178058
TU2489575 lncRNA upstream 55205 34227180 ~ 34227879 (-) True G2178079
TU2489589 lncRNA upstream 60990 34232965 ~ 34233440 (-) True G2178091
TU2489590 lncRNA upstream 61494 34233469 ~ 34233728 (-) True G2178092
XR_005040384.1 mRNA downstream 71182 34092309 ~ 34093015 (-) True LOC118945276
XM_036967490.1 mRNA downstream 513070 33638137 ~ 33651127 (-) True pygma
XM_021591462.2 mRNA downstream 536926 33620043 ~ 33627271 (-) True slc22a6l
XM_021591460.2 mRNA downstream 536927 33620043 ~ 33627270 (-) False slc22a6l
XM_036968091.1 mRNA downstream 538266 33620043 ~ 33625931 (-) False slc22a6l
XM_036967457.1 mRNA upstream 46658 34218633 ~ 34226731 (-) False LOC110510130
XM_021591476.2 mRNA upstream 46658 34218633 ~ 34226881 (-) True LOC110510130
XM_021591478.2 mRNA upstream 63701 34235676 ~ 34250665 (-) True LOC110510131
NM_001281317.1 mRNA upstream 85841 34257816 ~ 34268485 (-) True il2rc2
XM_021591482.2 mRNA upstream 166937 34338912 ~ 34342460 (-) False LOC110510135
TU2489480 other downstream 16878 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 651871 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 1519625 32643402 ~ 32644572 (-) True G2176363
TU2487109 other downstream 1730556 32432130 ~ 32433641 (-) False cpi1
TU2489664 other upstream 166936 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 631216 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 631216 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 1790009 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 2332498 36504473 ~ 36512189 (-) False LOC110510209

Expression Profile