RNA id: XM_021591476.2


Basic Information

Item Value
RNA id XM_021591476.2
length 6765
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110510130
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34218633 ~ 34226881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGCTGACATTGTGTAATACGCCTGCCATGAACGTTTACATGTAACCAGACTTCTGCTCTAGTGATTTGTTGAAAATATCATACGTCACTCTCTCAAAGATCGGAACCGGAGGTGGTCATTGGAAATATTGCACCACGTTAGGTGTACCCAACCATGGAGTCAACGGATAAGAACGAAGCTATAAAGCTCTTTGTGGGGAACCTGGCTTTGGACACCTCTCAGGAGGACCTGACACAGCTCTTTGGGCCATACGGACAGGTGGTCACCTGCAGTGTACTCCGGCAGTTTGCCTTCATCCATCTCCAGGGAGATGGTGCTGCTGATCTAGCCATAAGGGAACTGAATGGACGGGAGTTCCGTGGCCGCAACCTGGTGGTTGAAGAGTCCCGCGGAAGGCCCATGCATTCCACCAAGGTCTTTGTGGGGAATCTCAGTGCCATGTGTTCTGCTGAAGACCTGCAAGAGCTCTTTCAGACCTTTGGGAAAGTTCTGGAGTGTGATAAGGTCAAAGCGAGGCTCTCCTCCTCTGCGGGGTATGCCTTTGTACACATGGAGCGGAAGGAGGATGCAGTGCAGGCTATTGAGGCTCTCCATGGGACCACCTTCAAAGGCCGACCGCTCTCTGTGGAGCTCTCCAATGTGCAGCCCAGTAATCCCACCACGACTACAGCAAAGGCCCCCATCATGAGTCACTATGCCACTGAAAGCCCCTCCATCAACCCTCATATGGAGCACCACCAGAGTCAGGCTGCTGTACTGGCTGCTGCCGTTGCTGCAGCTGCAGGTCTGCCTCTTCAGGTGCAGCAGAGCTTGCACAACTCTGTCTACAACACAACGAGCTTTGATCCCACATACGCTGCGCTAAAGGGCATGACGGCAGCCAGCGCCACAGATGGTACTCCAGTGAGCCCTGCGGTCTACGGTGCCCTCGCCAGCCAGGTGTACGGCTCTGTAGCGGATCAGGTATACGACTCTATAGCCAACCAGGCCGCCAGCTATCAGAATTCAGCCACATCGGACGCAGAAGGCTACAGTAACCAGTACGACCCCACAGCTGGagaggcaccatcagcccaggcTGCTGTCAACCCGGCCTATGGTGGAGCCTCGGCCCTCTACAACGCCAGCTCAGCCTATGGCTCCATGGGGGGTGCAGAACCCACTGCCCAGGCCATCTTTGAGGCAGCACGGGCCCGCTTCTTCCAGCAGGGCCAGCAGGTTCTAGCGGAGCAGCAGATGGGGACGAAGTCAGGGGACAGGGACCGCAGCCCAGTACGCCGCTCCACTCCACTGCTGCCTGACCCTGTGCCCCAGCCCTTCCCCCAGCCACGCCCCAAACGCCGCGCCCTCCTCCCAACGCCACCCGGCCGACCAGAGGACCCTGCTGCTGATAGAGACCCCATTGCCAGATGCTATGCAGAGTACTATCAGCAGGTCCAGCAGTACCAACAGTACCAGCAGTACCAACAACAGTACCAGCAGTACCAATATGGCTACCCTCCTCCAGCCCCGACCCAGATGCCCCCCACAATGCCCAACTACCAGATGCCCATGCAGGCCCCACCCCCGACGGAGGCCCACAACCTGGAAGCGCCTGCTACCTACGCCCCAGCTAGAGCGTATGATCCGCCTCCATCACACAAGGAGCCCCTCCTCCGCCGCCCTGACTACTCCCACATGCCAGAGCACCGATAACCCTTTACATtgcagtgtgaatgtgtgtgtgtgtgtgtgaatgtgtgggttttGAGTGATGTAGTTGTGTGGTCCAAATGTGCATCACTGCAAGTTTGCCCATTTATAATTCCCCTGTTTTGCATCTTCTCTTTTCTAAACACAATTCTGACTAGTTTATTTTTCACTTTATAGTATGCCTGGTTTTGCTTTGATAGTAACGCTGCCCCATAATGCAGTAATCTATATTGTGAAGTCGTTATGGTTTTAAGGAAGTGTATGGTTGTGATGTGTACTGGGGGCTCTGTAATGACTGCTCTTCCTTACACATCCCCGTCCCATAATCTGTCAAATATGCGAGAATATTAATCCATACCAGAggagtgccttgttaaaagcCTAGTTGAAATATATTGTGTAAAATAAATGTGTATATTTTTGAGCGATGAAGGAAGCACCCAAATCGATCcatgcattttttaaatcagagcCTTGCCTCTGTCCTCAAGGTGACTTTAGCTCATCCAAATTAGCCATtagttcacatacactacatgtccaaaagtatatggacagcccttcaaattagtggagtcagctattttagccacactcgttgtggacaggtgtataaaatagctCACACAATGGCTCAGTCGCGAAGTGGTAGTCAACCCAAGCTCACAGAataggaccgccgagtgctgaagcgcgtaaaaatcatctgtcctcggttgctacacccactaccgagttccaaactgcctcaggaagcaacgtcagcacaataactgtttcttcaggagcttcatgaaatgggtttccatggccgaacagccgcacgcaagcataagatcaccatgcacaattccAAGCGTTGGCTTGAGTGGTGTAatgctcaccgccattggactctggagcagtggaaacacgtctggagtgatgaatcatgcttcaccatctggcagtccgacggacaaatctgggtttggcggatgccaggagaacactacctgctcaaatggtggaggaggaataatagtctggggctgtttttcatggttccggCTAGGTCCCTTATTTCCAGTGacatcttaaagctacagcatacaatgacattctagattattctgtgcttccaactttgtggcaaaagtttggggaaggccttttcttgtttcagcatgacaaagctCCCTGTGCACAGAGTTCCATACATTAATGGTCTGtcaagatcgatgtggaagaacttggcctgcccagagccctgaccttaactcaTCCCTTTGGGATgttggcctaatcgcccaacatcagtgcccgacctcactaatgtcttgtggctgaatagaagcaacaTCTactggaaatccttcccagaagagtggaggctgctatagcagcaaaggggggaccaactccatattaatacccatgattttggaataagatgtttgacgagcaggtgtccacatacttttggccatgtagtgtatatagtttagAGCTTAATTTTTCCATTGGCCAGAtttagttttttaaatttatATTGCCTTCATCGAAGACCTTGATATGAAAAGTCACTGTTCCAATATGTTCCAGCGTATGTAGATCTTTGGTTAATAAAATGGTTAAAGGTTTTAGAGCTTGTGtttagaaaaaaaaagaagaaaaaaatggaAAGCAAGGGGCAAAGTATCTTTACATATAGGCTAATTTGGACATGAGGACCAGTGTGACTGTATGTGTGGACACTTGTGAACATTCTAGGGGATCAATTTAAGCATGATGCCTTCACTTTTTATAACAATCACAGGAATACACATTCACACCTCAGTCATCAAACTTTCTCTCCATAATGTCTGGGGCTTTGGGAGCGAGACCCAGGCGCTTTGCTGCAACAACAGTACACATCTGCTGGAGTGAAATGCAAAACTCCCTTTTCTCTGGCCTCTGGGAATGTAGTCCTTCCCCACGTCTCACATGACCTCCCGTTGGAACTGATCAAATGTATCAGATAGAAATCCAACCAAGCGAACCACTTTAAGATTAGACAGGCTAGCTTTAAACTCGCATTTTCTGGGGGACTCGTTTTTTTATTTGCAGACAGTGATGCATGAATGCTTTCTATTGTTATACCATGAATACTAGCCTAGTGACTTAACTGGTTTCACCTCTGTTTGGTTTAAATGGAAAATGGAAATGTGGAAAGCCCTGCTGGTGGCAAGTGCATGCAGAGGGCTTCCTTTAAGCATGCCTTTCAGGATCTGAGGGTAATCGACTGCCATTTTGGGCCTCACCTTTTCTCCAAAGGACAAAAACTAGTGGGCTTTTCACACACAGTACTTTGTGTGGTTTGACCTTGTACAGGACAAACATGTTCtttttctttgttttcttttgGTTTAAGTGAACTTCCTGTGCGATCCTGATCATAATATTCTGTGAGAGTATTTACTTCAATTGGACCATCAGATTAATGAATTGTCTTAAATGGAGCCATTAGGCTGTCCAGGTTTGATGGAAACTCATTGGTTTCTATTATTCAGTATGTAACCTATTGAAACCTTAAGCCTCAAGCTTAAGTAATAAAAGTAGGAGTGATTTGGTTTGAGAATAAAACAACATGCGGCTGTATTTTTTTATAATTTAAACTAGGAAATGTTTTCCCTATCGGGTTAATTATTAGACATGCGATTAAACATGATATTAAATCGTTTCCATGTTTTTTTTCCCAAAGGATTTACTAATTATTTCAACCTTTCACGTCTGAAGGGAAACACCTTAAACAAAGATTATCCCATTCCTGTGAACTATGACAAGATCATTTCAAACAGTTCTCAATTGGGCTCTACCACTTGGTCTCAGCCTAGCTCTTCATTACACCTACCTCAGAACATGCGACAAACCTCATGGCAATGTTTGTTAGTTTGTCGCCGTGGGTGTCAGAAGAACAGTTGAAGGCAATCATATCATTAGAATGACAAATGTTTGTTGCCTTGCTGCGTCACAGTATTTGGATGTAGAAGTGAGCTGTAGACTACAGTTGGTTATGGATTGGTTTTAATTTCTGATAGGAAAAAATGTAATCGTTATCTCATTCTTTCTGGTTACCATGACAACATGCACCTGCTTATTGCACGTATATTCGTTGATATGGCTTTCTGTGATGTTTTAAAACTGTAGTGCATGACATTGTTACTGTTATTGCTCTTCCAGCTACGTTTTCCCTTCTCGCTAATTATTACAGCTAAAATGGCTCCTGGGTCCCTGGACGCCATGTTGTGTGTGACGGGGGAAGAAAATTAGTCGCGCAATGCCGTGGACGCAGTCCCCACAAAGGTAAAGCCCTCTGCCCCCGACCACGCCTGCACTTCGACCATACACTTCCCTCATTGACCCCACTCCTCCTTCACAACGAGGCACcccattttattatttatttaaggtCTGTGATGCTGGAAGCCCAACAAACTATCACAAGACAACTAGTTTACAAGAACCTAGGGCCTGAATGTCAGGGCTTGTCCAATGGGTTAGTGAGGCCACACTCCCCtcattgtagttgtagtactgcTACTAGTATGGTTGATAAGGGTAATCCCCACAAGGCACATACACTATTGAGCCTTTTGCAGACCCAACTGATCTGGGTTGACGCTAGATGTGCCTGTAAAATAGTCCAGTCATGGCTCTATCTGAGGCCATCTTCCTTTCCGAAATTAGACGACCCCCATCAACAGTAGTCATggatttttcttattttctttaaTTCTATTGATGTTTTTAAAGGAATAATTTTGCCAAATTGAAATGAATCACACTGTATATTGTCATTAAATGAATCTTCAATTAATCACAGAAATGGGTTTTAAACCTGTACTCAAAACAGATTTAAGAAACTTAAGTTATTGTAATTACGGGTGGTCAGATTGGGGAATGCTGGAGTTGTTGCGTATGCTTGTGTTGTGGCATATTTTTCTGAGGTATTTCCAGTGAGACAAGATGTGCATTCACGCTCAAAACTGAGGCGTTCCAGCTGTGCTTTGAACGGCTAAGGACGCAGTGGTACGCAAAAGGCCAGatgaacggagggagggaggtagggctATCGACCTCTGTCCCACGCATGCTGGGTGAGTAACCAATGCACCACTGCCCCGCTCAAATTCACctacctacccccctcccccccttcaaTCTGCAGCACAACGCCCAAACCCTCTCACTCTGATCCCATAACCAGTATATCTACAGGCCTACAACACCGTCCCCTCGAGAACATTCCACAGCTGCGTTAGCTTAGAAGACATGGATGTCAAGAGGACAACATTCAGTATTCTACGTTCCCTGTCTAGTTTTAAGTAAATTGTACATATCCTAATCAACCTGTTAAATTGTCTGATTACAATTTTCAAACATTGATTGGGAACCTTAATGTAATCATGTGGTTGATGTAAGATATGTTAGGCTgtttttacacaggcagcccaatttggATCTTTTGCCAATACTTGGGcagaagatcagaattgggctgcccgTGTAAATGCAGCCAAACACAAAAATTCCACCATATTGTTTTTGTTAAGTTTGTATTGCTTTGTTTATTGAGGACTTCAGTGGTCTCCCTCAATGAATGAGAGCTGGACTATATCGGCCTACGATACACCGTGCACGGTTTCAATCAAAGTCCCCTTACCTATCTGTCACGTTATAGTTTCGAATTGGCACTAATCATATCACTACTAAACAGTTTTTCTTCCAGTTTCCCAATCTTTCATCCATTGGAATTCCTGACATTTTTACAGAGACTTGTTTGAACGCATGTGGATTAGGACTGAAAACTATATGTAAGATCAAGCTTTATGAGAAATCAGGGAAAATACTGTACATCTGTAGATTACTGTTATTTGTCCATTACAGAAAATGAAAGACAGGTTGCTGATTGCAGAACCATTTATTGAAAGAAATAGAAATGAATCACCTGATGCTTAATTGAGAATTTGTTTTAATTTGTAGCTGTCAAATTCATTTCAATGAAGACACGTTGTTCTTTGTAAGTCTCAATAAATGACATTGAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489482 lncRNA downstream 2386 34129059 ~ 34216247 (-) False G2177991
TU2489478 lncRNA downstream 2386 34143714 ~ 34216247 (-) False G2177991
TU2489479 lncRNA downstream 2386 34143714 ~ 34216247 (-) True G2177991
TU2489554 lncRNA downstream 23440 34194466 ~ 34195193 (-) True G2178058
TU2489557 lncRNA downstream 25361 34193007 ~ 34193272 (-) True G2178061
TU2489575 lncRNA upstream 299 34227180 ~ 34227879 (-) True G2178079
TU2489589 lncRNA upstream 6084 34232965 ~ 34233440 (-) True G2178091
TU2489590 lncRNA upstream 6588 34233469 ~ 34233728 (-) True G2178092
TU2489594 lncRNA upstream 24219 34251100 ~ 34251554 (-) True G2178096
TU2489600 lncRNA upstream 33629 34260510 ~ 34265528 (-) True G2178102
XM_021591474.2 mRNA downstream 46658 34164197 ~ 34171975 (-) True si:dkeyp-50d11.2
XM_021591473.2 mRNA downstream 46659 34164184 ~ 34171974 (-) False si:dkeyp-50d11.2
XR_005040384.1 mRNA downstream 125618 34092309 ~ 34093015 (-) True LOC118945276
XM_036967490.1 mRNA downstream 567506 33638137 ~ 33651127 (-) True pygma
XM_021591462.2 mRNA downstream 591362 33620043 ~ 33627271 (-) True slc22a6l
XM_021591478.2 mRNA upstream 8795 34235676 ~ 34250665 (-) True LOC110510131
NM_001281317.1 mRNA upstream 30935 34257816 ~ 34268485 (-) True il2rc2
XM_021591482.2 mRNA upstream 112031 34338912 ~ 34342460 (-) False LOC110510135
XM_021591485.2 mRNA upstream 135628 34362509 ~ 34372262 (-) False LOC110510139
XM_021591487.2 mRNA upstream 135628 34362509 ~ 34373718 (-) False LOC110510139
TU2489480 other downstream 71314 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 706307 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 1574061 32643402 ~ 32644572 (-) True G2176363
TU2487109 other downstream 1784992 32432130 ~ 32433641 (-) False cpi1
TU2489664 other upstream 112030 34338911 ~ 34341813 (-) True LOC110510135
TU2489908 other upstream 576310 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 576310 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 1735103 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 2277592 36504473 ~ 36512189 (-) False LOC110510209

Expression Profile