RNA id: XM_036968039.1


Basic Information

Item Value
RNA id XM_036968039.1
length 2518
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110510139
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34362509 ~ 34384584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGATGATTTCTTAACTGGAACCGCTTTATGGAATCTGCTATTTCGAAAGAGAACTAGCGTGGCGTTGTTCTGCTGAGTTGAAGTTTCATTGTGGGATTTCCAAACCCAAGACAGGGCTCTATCTCCATGAGCCCGAAAACGGCAAAAACAAGTGACTAAAGAGGAATAGGAACATGCAACCAGAGAGCCCCAGCTCAAGGGGATAGTGACGAGGCTGTACAGCCGCACAGGCTTCTGCCTTCAGATGCAGGCTGATGGAACTATCGATGGAACCAAGGACGAGGACAACAGCTATGCTGTGTTCAACCTCATTCCTGTTGGGCTGCGAGTGGTGGCCATCCAGGGGGTTCAGACCAAGCTTTACCTAGCCATGAACAACGACGGCTTCCTCTACACTTCGGAACACTTCACCCCGGAGTGTAAGTTCAAGGAGTCAGTGTTTGAGAACTACTACGTGACCTACTCCTCCATGCTCTACAGACAGCAGCAGTCTGGCAGGGCCTGGTACCTTGGCCTCAATAAAGAGGGAGTCATCATGAAAGGGAACCATGTGAAGAAGAATAAACCATCAGGCCACTTCATCCCCAAGCCACTGAAAGTTGCCATGTACAGGGAACCCTCTCTCCATGATCTGACCGAGTTCTCCCACTCCGGCAGCGGTACTCCCACCAAGAGCCGTAGTGCATCAGCCCTGCTGAACGGAGGAGGGAAGACACTGAGCCAGAACGAGCAGTCCACATAGCTGTGGTGGTCAGCGTCAGGCAGAGGGCGGTTCTCACTGTAAGCAGACTCAACTGATCctcatcacactgaacaggtGGAGAGGAAGCAAATTAGCTTAGCTTAGTGTGTACTGAAACCACTGTGACAGACTATGACATCATCAATTAAATAATTCCATGAGTGAGCTTCTGCGGGTCAACTTTGCTATGAACTTCGATACGAAAAGCCATTTTGCTGGTCTGGAATTTATATTCTTCCTTGTATTCTTGAGCATATGTAGTGTATTACCAATGTATATCTCTCTGAAGGTCTTGAGAGGGAGAGTTACTGGTCAGTATTTATGTGGTCCATCAACTGTTGCTTTCATGCCTCCTAAAAAAAGCTTTTTTCTGTGTTTGAGTCCAAGGTGTACATATCTGCAAGCCTTCTGCCTCGTCTACCATATAAATTGCTTGCCAGCTATACTGATTGCGATCATTTGTTCCTGTGTACCAAAGAGTCAAGCGTGTTTCTCTAGTTTTACTCAAGgcaaagaaagaaaggaagaaagaaagaaatcgaATCACAAGCATAGGCCATGTCCTAAATCTGTCGTATCTACTACTAAAACGACAAACGGTGTAGTGTGTACCAATCGTACTACAAACGGTGTAGTGTGTACTAATCGTACTACAAACGGTGTAGTGTGTACTAATCGTACTAGAAACGGTGTAGTGTGTACTAATCGTACTACAAACGGTGTAGTGTGTACCAATCGTACTACAAACGGTGTAGTGTGTACCAATCGTACTACAAACGGTGTAGTGTGTACTAATCGTACTACAAACGGTGTAGTGTGTACCAATCGTACTACAAACGGTGTAGTGTGTACCAATCGTACTACAAACGGTGTAGTGTGTACTAATcgtactacatactatttagaacATACTGTTTAGTAAACATTTATGCAGTAAGcaacaaatatcaacatactaggctcccccatactgagaatgcatCATCTAATGCACAATTGCGTTGTTTTCCGACATTCATTCGTTTTGGTACAACCCATCCCCCCCTTTTCTGATTATCAGCTGATATGTTGTCAAACACACGTGGGTCTAAAAATACCAATCTCTTCCTCAATAGcatgacatcctggcatttaaagcattTTCAAAATGTGTCATACTATGAAGCGTTCTATTTTGGCATACCCATCAGTCTACGAGTTACAACACAAGGAGGCGAGGGGAGACACAGACAATGTGTGGTCCACAGCAACTTGTTTTAATAATACAACAGAGAAGCAGAGTAGTTGTATTGTGTCATTAGTAGTCTCCTTTGACAAACTATAAACAACATTTCATATGGTATTTAGATGTATTCAgtcctttgtctgtgtgtgtgtgtgaaaggatATTAACATAATCcttgattttttattttaccatcaAATGGGGATTATTAGTGAAATTGAGGGCTCTTACAGATTAAATGATTGTTTGTATTCTCCtgcattgttttttccccctggaGCCGAATAGATGCTTATGTCTATcattttgattgattgattgacactaTTATTGCATGAGAGACTGTGGACCTCTGGGAAATAGCAGCAtgatgtactgtaggtctactatgCTTATTATCTACCTGTTTTGGACGCTGTGCTCCAGTCTATACCAGACTACAAGTGAATGATCCACAGAGCACAGATACACTTTTAATCTGGTACCTTCTTGCAGTAGGTTATTTGTTGTTCTAACGAAAATGCACTGAATAAAATGTTTATAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489674 lncRNA downstream 6239 34355971 ~ 34356270 (-) True G2178162
TU2489669 lncRNA downstream 13356 34348887 ~ 34349153 (-) True G2178157
TU2489667 lncRNA downstream 18094 34344166 ~ 34344415 (-) True G2178155
TU2489656 lncRNA downstream 36842 34325439 ~ 34325667 (-) True G2178146
TU2489638 lncRNA downstream 58375 34303931 ~ 34304134 (-) True G2178128
TU2489739 lncRNA upstream 68081 34452660 ~ 34455530 (-) True G2178219
TU2489749 lncRNA upstream 84811 34469390 ~ 34469626 (-) True G2178229
TU2489776 lncRNA upstream 143069 34527648 ~ 34527877 (-) True G2178254
TU2489785 lncRNA upstream 154711 34539290 ~ 34539733 (-) True G2178263
TU2489588 lncRNA upstream 187860 34572439 ~ 34573267 (-) True G2178090
XM_021591482.2 mRNA downstream 20049 34338912 ~ 34342460 (-) False LOC110510135
NM_001281317.1 mRNA downstream 94024 34257816 ~ 34268485 (-) True il2rc2
XM_021591478.2 mRNA downstream 111844 34235676 ~ 34250665 (-) True LOC110510131
XM_021591476.2 mRNA downstream 135628 34218633 ~ 34226881 (-) True LOC110510130
XM_036967457.1 mRNA downstream 135778 34218633 ~ 34226731 (-) False LOC110510130
trnas-gcu-266 mRNA upstream 161725 34546304 ~ 34546385 (-) True trnas-gcu-266
XM_036967276.1 mRNA upstream 162202 34546781 ~ 34565132 (-) False hif1al2
XM_036967275.1 mRNA upstream 162202 34546781 ~ 34565140 (-) False hif1al2
XM_021591498.2 mRNA upstream 162202 34546781 ~ 34565141 (-) True hif1al2
XM_021591507.2 mRNA upstream 235379 34619958 ~ 34629302 (-) True LOC110510152
TU2489664 other downstream 20696 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 215190 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 850183 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 1717937 32643402 ~ 32644572 (-) True G2176363
TU2487108 other downstream 1928868 32432220 ~ 32433641 (-) True cpi1
TU2489908 other upstream 418612 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 418612 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 1577405 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 2119894 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 2121961 36506540 ~ 36507120 (-) True G2180120

Expression Profile