RNA id: TCONS_00055978


Basic Information

Item Value
RNA id TCONS_00055978
length 765
lncRNA type antisense
GC content 0.41
exon number 2
gene id XLOC_028920
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 34359175 ~ 34362421 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtaaatgagagtgtatgggtttttcccagagatgtgttgcagctggaagagtatctgctgcgtaaaaaatgctggataagttgactgttcattccactttggtgaccccagattaataaagggatgaagctgaaaaaaatgaatgaacacaaacccagtttttcctactatgttaatcaatagttacaggtttctaacattcttcaaaatatctgctttagtgtttaacagattcaaactgctttgaaacaagtagaggatgaataaatggtggcagaatagtaaactatatctttaaatgttttattctgtatgttatgtgtattcatatttgtcttgtcttttgtcatattgtccttttagctcagattgtgatggacctggaatgcgacaccagttactcttaaagcctgatttatacttctgcgtcaggggaccggcataacccacggcgcatgcaacgcgcgtggctgtgcatttatacttctgcgcgctgtctctgtcggtctgcattaacacttccgaaacgctagttggcagtgaggtttaaatgttcctctgtgtcgagtttcttcgctgcttttttgcttttcctgaacacttccgggatgtacaagtggctcaaactcgctcattttgaggcaggaaccggtggacgtacaacaactttaactatgagcagGTTCCTTGTAAAGATTAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACTACATCAAGATATGCGGTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168796

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057370 lncRNA downstream 399309 33959375 ~ 33961465 (-) True XLOC_028917
TCONS_00055973 lncRNA downstream 551831 33796692 ~ 33808943 (-) False XLOC_028916
TCONS_00055974 lncRNA downstream 551831 33806333 ~ 33808943 (-) True XLOC_028916
TCONS_00058256 lncRNA downstream 660990 33698726 ~ 33699784 (-) True XLOC_028914
TCONS_00058255 lncRNA downstream 913960 33417548 ~ 33446814 (-) True XLOC_028912
TCONS_00055979 lncRNA upstream 26731 34389152 ~ 34390120 (-) True XLOC_028921
TCONS_00058257 lncRNA upstream 94672 34457093 ~ 34458495 (-) False XLOC_028922
TCONS_00057371 lncRNA upstream 124551 34486972 ~ 34494214 (-) False XLOC_028923
TCONS_00057372 lncRNA upstream 124551 34486972 ~ 34494646 (-) True XLOC_028923
TCONS_00058258 lncRNA upstream 157083 34519504 ~ 34520936 (-) True XLOC_028924
TCONS_00055971 mRNA downstream 597406 33720803 ~ 33763368 (-) False XLOC_028915
TCONS_00055970 mRNA downstream 597406 33720803 ~ 33763368 (-) False XLOC_028915
TCONS_00055972 mRNA downstream 597553 33722076 ~ 33763221 (-) True XLOC_028915
TCONS_00055969 mRNA downstream 835555 33524237 ~ 33525219 (-) True XLOC_028913
TCONS_00055968 mRNA downstream 955291 33399196 ~ 33405483 (-) True XLOC_028911
TCONS_00055980 mRNA upstream 81229 34443650 ~ 34459618 (-) False XLOC_028922
TCONS_00055981 mRNA upstream 81361 34443782 ~ 34459615 (-) False XLOC_028922
TCONS_00055982 mRNA upstream 86945 34449366 ~ 34455848 (-) False XLOC_028922
TCONS_00055983 mRNA upstream 86945 34449366 ~ 34460301 (-) False XLOC_028922
TCONS_00055984 mRNA upstream 86945 34449366 ~ 34480611 (-) False XLOC_028922
TCONS_00055976 other downstream 392422 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055975 other downstream 393706 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055967 other downstream 968853 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055966 other downstream 970390 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055943 other downstream 2103044 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055986 other upstream 190646 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055991 other upstream 870876 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055992 other upstream 1372585 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00056013 other upstream 2426716 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056015 other upstream 2427758 36790179 ~ 36790965 (-) True XLOC_028946

Expression Profile

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