RNA id: XM_021591498.2


Basic Information

Item Value
RNA id XM_021591498.2
length 2461
RNA type mRNA
GC content 0.49
exon number 12
gene id hif1al2
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34546781 ~ 34565141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGGTTCAGGAACCTGTTCTAGTTCAACCTCCAAAAGTACAAGTGGGACGAAATGCTCGCGACCGCATGACTGGCATGTGTCTGTGATTACTAGCAAGTGTCCATTCAGAGATTTTGGATAATGTTTCCTCATTTAGGAAATTCTCTGGAAGATGCTTGTGATCAAAAGCTCCACAAAAcaaagagacagaaggacagaattAATGGACagaagagaagcagGGTGAGTACGGAGCGGCTGCGGGCCCAGTCCCGTGTTGCAGCtaagagtaggagggagagagagagacgtttgtTTGGGGAGCTGGCAGCATGGCTACctctgccctctggtctgactGGCCACATAGACAAGGCTTCTATCGTCAGACTCACACTGGACTACCTGCGTCTGAGAGCGCTGCTAGACCATCGAGACAATGTCACACCAGAGACCAGGGTCTGCTCTGACACAGTCCACTTCACCATGCACGGGCGATACCCAATGGCAGGGATTTTCTCTGTGGAGACAGTGCTGGAGTCTGCTGTTGGGGGTTTCATGCTCTTGGTGTCTCAGAACGGCCAAGTTATCTTCACTACAGGGGACATAAGGACACACACTGGCATCAACCAGATGGATCTGATTGGTAGGAGTCTGTTTGACTTCATGCACCACTGTGACCAGAGGGAAGTCAGAGATATCCTCTCAAAAATGATAGCTACTGAGAGACAACAGCAGTGTGACTTCCTCCTCCGTGTGAAGAGCACTCTGACCTCTCAGGGTCGAGCTGTCAATCAAAGACACACACGATGGAAGgtgatTCACTGCGTTGGGGTTAAGAAACAATCTCACCTTCCAGAGTCAGCCTGTCTTGTCCTAATGTGCCGACCCTTACCCATCTCACAATGCATCATCAGGGATGCCAGCTTGAATCACAAGACCTTCCTGAGCGGACATCACCCGGACATGAGGTTCACCTACTGCCATTCAGGTGTCAAGGAGCTGACTGGATATACAGAAACAGAACTTCTGGGCCAGTCTGTGTATCAGTATTACCACACATCTGACTGCCAGCACATTCACAAAGCACACCAGAGCTTGCTCTCTAAGGGACAGGCTACCATGGGCAGGTACCGTCTGCTGCTGAAAGGTGGTGGGTATGTGTGGGCAGAGACGGATGCATCGGTGGTGTACAACAACCAGACTGGGCAGCCCCAGAGTGTTGTCTGCATCAACTACATTCTAAGTGAGGTGGAGCTACCAGAGATGGTGTTCTCACTGCAGCAAACAGAACCTCTACTGAGGCCCTGTTACTCTGATCTTGTGGGGCCCATCCTGCAGAATGAGACCTATCCTGCAGCAGAGACAGCTGTTCATCTACGCAACACAAAAATACCAACTCCAGAACACAACAATGAGATCCAAACCTATGAGGGATATTCAGAGCTCAACCGAGAGGATCAAATGAACATGAACTCACTCTCTGAACTATGTGAGCTGGACCTGGACTCGTTGGCTCCATACATACCCATGGATGGAGAAGACTTCCTCCTCACTCCAGTTTTAGATGGGATCTTGGCCATGATAGAAGGTCCTGTTCTTCCACCTGGTTTGGAAGGCCATTGTTCCTTGGGGAAGTCCCCTATATCTGCTGGTTCTTTCACCACACATCAAATGAAAACCTTGCAGATAGAGCCCCCTTGTGACTCAGGGGCGTCACATACAGTCAAAGAGTCAGAGTTCGGGGACCATATGAAGTCAGTCTATAGAGGAGGCAGTGCTGTGTTCAAGGAGGGCCCTGACTATGCCGGATTGGAGGGCCTTGTCCCGAACGAACAGTGGAGTGAGAAACACAAGTCCTGTAGACATCCACAGGCACTTATGGCTGCTGCTGTTAGGCTGCCTTACCGGACCGTGGAATATTTCCCCATTCACCCACAAGATGGATCCACTTGCTTGTGTGGATCACCATCAAGGCAAGTGTTGTGGAAATACACACAGCAGCCCAAAATCCCAAGCACAGGCCCTCAGCCACCTACCAATCATATAGACGAGATGTCAACATGCCATGTTCCTTTCAGCCTGCCAGTACTGAGCAAGCTGGACTGTGAGGTCACACTGGGGCCAACCAGCTGCCTGCTTCAGGGGTCAGAGATCACCTCCGTCCTGGACCAGGCCCCCTCCAGATTCTTACACATGACAACATGGGGCATAAATCAGCTCTCCACCCAATATGCCCATCCTTGTTACGCACCCAGATCAGCTATTGAAGTCAGCTCTGGCACATCGACATCATATGCTGAATGGATAACATGAACTTGATTATCCCACGAATTGTGCCAATCTCTCCTCAACTAGGCCTATATTGTGACTTTTACTGGCAATTTAACTGACAAATGTGGATGCATAGCCTAGTTATTAAATACAGCATTTAATTACAATGATCAATATTAAAACTGTTGTCTTTGTTTTGTGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489785 lncRNA downstream 7048 34539290 ~ 34539733 (-) True G2178263
TU2489776 lncRNA downstream 18904 34527648 ~ 34527877 (-) True G2178254
TU2489749 lncRNA downstream 77155 34469390 ~ 34469626 (-) True G2178229
TU2489739 lncRNA downstream 91251 34452660 ~ 34455530 (-) True G2178219
TU2489674 lncRNA downstream 190511 34355971 ~ 34356270 (-) True G2178162
TU2489588 lncRNA upstream 7298 34572439 ~ 34573267 (-) True G2178090
TU2489586 lncRNA upstream 15705 34580846 ~ 34581441 (-) True G2178088
TU2489796 lncRNA upstream 22471 34587612 ~ 34587935 (-) True G2178274
TU2489798 lncRNA upstream 24029 34589170 ~ 34589628 (-) True G2178276
TU2489806 lncRNA upstream 47699 34612840 ~ 34614255 (-) True G2178283
trnas-gcu-266 mRNA downstream 396 34546304 ~ 34546385 (-) True trnas-gcu-266
XM_021591486.2 mRNA downstream 162197 34362509 ~ 34384584 (-) True LOC110510139
XM_036968039.1 mRNA downstream 162202 34362509 ~ 34384579 (-) False LOC110510139
XM_021591487.2 mRNA downstream 173063 34362509 ~ 34373718 (-) False LOC110510139
XM_021591485.2 mRNA downstream 174519 34362509 ~ 34372262 (-) False LOC110510139
XM_021591507.2 mRNA upstream 54817 34619958 ~ 34629302 (-) True LOC110510152
NM_001124465.1 mRNA upstream 119278 34684419 ~ 34685771 (-) False leap-2b
XM_021591513.2 mRNA upstream 150798 34715939 ~ 34727232 (-) True LOC110510156
XM_021591518.2 mRNA upstream 244730 34809871 ~ 34814939 (-) True LOC110510161
XM_036967952.1 mRNA upstream 286055 34851196 ~ 34862398 (-) False LOC110510165
TU2489664 other downstream 204968 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 399462 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1034455 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 1902209 32643402 ~ 32644572 (-) True G2176363
TU2487108 other downstream 2113140 32432220 ~ 32433641 (-) True cpi1
TU2489908 other upstream 238050 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 238050 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 1396843 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1939332 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1941399 36506540 ~ 36507120 (-) True G2180120

Expression Profile