RNA id: XM_021591507.2


Basic Information

Item Value
RNA id XM_021591507.2
length 1731
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110510152
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34619958 ~ 34629302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATGTGATGCTGTTACTGCCATTTCATCAGCGGATTTTCACAAACATCTCCATCTTTAAACATGAAATTGCTATGAAATTAAACCATCGACAAGTTGTAAGGACGGCCGTTAGCCAATTTTACATCAAACTTGCCATCACAGTAACAGTTCCCTGTGTagaataaaataatacaaaaggATACTAGGACAAGGCCTATTTGCGTATCACTGCTTGGGGTAAAACAGTGTTTGACTAGGCCTCCTGAGATCACTGTTTCCGAGAGCATCTTCGATATACGAGATTTCTCAAGAACATGGGATTTGCTATTTACAGCCGTTGATCGCTCATCTAACAAGATTCTATGAGAGATGGAAGCGATATGGCTGTACCAGTTTCGACTCATCGTCATTGGGGACTCGACAGTAGGAAAGTCGTGCCTGATCCGGCGATTCACAGAGGGACGCTTTGCGCATGTGTCCGACCCCACAGTCGGTGTAGACTTCTTCTCACGCCTAGTGGAGATAGAACCAGGCAAACGCATTAAACTTCAAATCTGGGACACAGCCGGACAAGAGCGATTCAGgTCTATTACCAGGGCTTATTACCGTAACTCTGTTGGGGGGCTGCTGCTGTTCGACATCACCAACCGTCGCTCCTTCCAGAATGTGCATGAGTGGCTGGAGGAGGCCCGGAGTCACGTCCAGCCTCACAGCATCGTATTTCTGTTGGTGGGCCACAAGTGCGACCTGGAGCCCCAGAGGCAGGTGAGCCAGCAAGAGGCGGAGAAGCTGGCAGGTACCTATGGTATGCGCTACGTGGAGACATCAGCTCGCGACGCCATCAACGTGGAAAAGGCCTTCACTGAGCTAACGCGGGACATCTTTGAGCTCGTGAAGAGCGGTGACATCAACATCCAGGAGGGTTGGGAGGGGGTGAAGAGTGGCTTGGTGCCCAACGTGGTGCACTCCTCAGAAGAGGTCACCAAGAGTGGCCGGCGGTGCCTCTGCTGATTAGCCTGTCTGTCTAGTTGGCTTCACTCAACCCAGCCCATGCAGTCCTGTTACATTATGTCCCACTAGCTCGCAATCTTGTCacatatatatatctctctcactcccatTCTGAGTACTGGAAGGCCATTCCCGCTCTAGTCTACCACTGAATAAAACATGAATACAGCTACTTTCCACAGTAACCTTCCTGGCGTCTCTGTCTTACCTGTTACAGGCACTTGAAAGACAAGAAATGGCCTGTTTTATGATTTCATTGTCCTCCCTGTATTTATGCTTCATCTTGTGCCCCACAGAAGGAACACACCTCAAACTTTACAcgtctgttctgtgttctggaGTCTGGGGAACTCACACAACTATCGGGGGGGGGGAGGGTGTTCAATACAGGGGGAAACACCAAATCTATCACAGCTTATTCCACCTTGGCTATGGAAAGAACCAGAAAGCGTGTGTTGTATTACTGGCTGTGTGCAATGCTTCCTGCTTTTGGTGCGAGACTGATGACACCCCCAGACACATGAACAACCAAGAACACAATAGTGTATTGCCATCATCCTTTTCATCACAGATGGAACCAAAGCTTGCGTGGACTGAATCAGTTCTACATGAGTATCAACAGGGAATTTGCACAGTTGAGTGTTGGGTAGGCTGCACTGTGCGATGCCTAACATCAATGTTTTTCATTTGCCGTTTTCTTCATCGTTGCTCATATTAAATGCACAGTTGGGGACACAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489806 lncRNA downstream 5703 34612840 ~ 34614255 (-) True G2178283
TU2489798 lncRNA downstream 30330 34589170 ~ 34589628 (-) True G2178276
TU2489796 lncRNA downstream 32023 34587612 ~ 34587935 (-) True G2178274
TU2489586 lncRNA downstream 38517 34580846 ~ 34581441 (-) True G2178088
TU2489588 lncRNA downstream 46691 34572439 ~ 34573267 (-) True G2178090
TU2489836 lncRNA upstream 24776 34654078 ~ 34654620 (-) True G2178312
TU2489837 lncRNA upstream 28873 34658175 ~ 34661244 (-) True G2178313
TU2489852 lncRNA upstream 49282 34678584 ~ 34678907 (-) True G2178326
TU2489800 lncRNA upstream 55115 34684417 ~ 34685804 (-) False leap-2b
TU2489801 lncRNA upstream 55115 34684417 ~ 34685804 (-) True leap-2b
XM_021591498.2 mRNA downstream 54817 34546781 ~ 34565141 (-) True hif1al2
XM_036967275.1 mRNA downstream 54818 34546781 ~ 34565140 (-) False hif1al2
XM_036967276.1 mRNA downstream 54826 34546781 ~ 34565132 (-) False hif1al2
trnas-gcu-266 mRNA downstream 73573 34546304 ~ 34546385 (-) True trnas-gcu-266
XM_021591486.2 mRNA downstream 235374 34362509 ~ 34384584 (-) True LOC110510139
NM_001124465.1 mRNA upstream 55117 34684419 ~ 34685771 (-) False leap-2b
XM_021591513.2 mRNA upstream 86637 34715939 ~ 34727232 (-) True LOC110510156
XM_021591518.2 mRNA upstream 180569 34809871 ~ 34814939 (-) True LOC110510161
XM_036967952.1 mRNA upstream 221894 34851196 ~ 34862398 (-) False LOC110510165
XM_036967951.1 mRNA upstream 221894 34851196 ~ 34862444 (-) False LOC110510165
TU2489664 other downstream 278145 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 472639 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1107632 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 1975386 32643402 ~ 32644572 (-) True G2176363
TU2487108 other downstream 2186317 32432220 ~ 32433641 (-) True cpi1
TU2489908 other upstream 173889 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 173889 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 1332682 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1875171 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1877238 36506540 ~ 36507120 (-) True G2180120

Expression Profile