RNA id: TU2489800


Basic Information

Item Value
RNA id TU2489800
length 1180
lncRNA type sense_over
GC content 0.41
exon number 3
gene id leap-2b
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34684417 ~ 34685804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagtgatagagtgagagagcgagagcgagagagagggatggtataTAAGCGGAGTTCTCCAAAAGAACGTTTGCTACGCTAGTTAGAAACAGACACctagctgcctgccatccagcacCTTTCACCGAATTTTCCAGAGCATATCTCACCATGCACGGTCAAAACCACAGCAAAGCAACGCAAGGTGTGTGTCTGGTGGCTCTGATTCTTATGCATCAGGTGTGTGCTAGTCCAATAGGAAGCCATGATTCAAGGCTGAGTCTGCAGCAGGGCACCAAGCTACTGGAACGGAGAACCCGCATGACCCCTCTGTGGAGGTTCATGGGTACCAAGCCCACTGGGGCCTACTGCCGAGACCATTTTGAGTGCTCCACCCAAATCTGCAGAAGGGGCCACTGTGCCCTCAGTGGGGCAGTTCATTCCTAGAAGTGGAGGAGCCAGAGGTTTCTTCTCACCAATCAGAGAACATTGACTAATGTTTTAATGGAGTTGATTTACGTAACAAGCATGTCAAGAATCTTCCCAGACATGGTGAAACTTATCAGATtgcaaactgtttttttttttatgtaggcCAGAGATGAAACATTTTGAAATTAGAGGAATGGTTTTATCAACTTGGTGGATATTGATCTCACATGTACTTGAAAGCACTTTAACTTACCATTTCTGagtatgtactgtataatactacaaCTCAAGAGCGTTgaaactatttttattttattttgtattttatccccattagctgtttgcgaaagcagcagctattcttcttGGGGTCCACACAATGATCACCATTAAACATTGCTGTAAATGTCCTACATGAAGACTGACATCCTATACAACAGGGTTTAGTTTAAATGTTTAGTATGCACTGTTAAGTGTGTACTGAAGTGAATATGAACCATTCATCCATGTGCTGTACTGTAACGATTCTTGCTTAATGTCTTTGTAGTGATTTGTATAGAAATAGTATAACGAAGAGGCAAAATGTCAGATGTATTCGAAAAAGGTAATACACCAAAGATTTGCGCACAAATTAATGCAAGGGTGAAATATTTGCATAAGAGCGTACTGTAAAGGAATCAATGTACTGTGCCTGTCTACACTTACATTGTTTAACAAGAGAAGACACACTTAAAGTTGCAAAAATAAAAGTACATTTCTGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489852 lncRNA downstream 5510 34678584 ~ 34678907 (-) True G2178326
TU2489837 lncRNA downstream 23173 34658175 ~ 34661244 (-) True G2178313
TU2489836 lncRNA downstream 29797 34654078 ~ 34654620 (-) True G2178312
TU2489806 lncRNA downstream 70162 34612840 ~ 34614255 (-) True G2178283
TU2489798 lncRNA downstream 94789 34589170 ~ 34589628 (-) True G2178276
TU2489894 lncRNA upstream 60353 34746157 ~ 34746483 (-) True G2178362
TU2489913 lncRNA upstream 74959 34760763 ~ 34762133 (-) True G2178374
TU2489916 lncRNA upstream 77442 34763246 ~ 34763490 (-) True G2178377
TU2489919 lncRNA upstream 80108 34765912 ~ 34766184 (-) True G2178380
TU2489922 lncRNA upstream 86908 34772712 ~ 34772942 (-) True G2178383
XM_021591507.2 mRNA downstream 55115 34619958 ~ 34629302 (-) True LOC110510152
XM_021591498.2 mRNA downstream 119276 34546781 ~ 34565141 (-) True hif1al2
XM_036967275.1 mRNA downstream 119277 34546781 ~ 34565140 (-) False hif1al2
XM_036967276.1 mRNA downstream 119285 34546781 ~ 34565132 (-) False hif1al2
trnas-gcu-266 mRNA downstream 138032 34546304 ~ 34546385 (-) True trnas-gcu-266
XM_021591513.2 mRNA upstream 30135 34715939 ~ 34727232 (-) True LOC110510156
XM_021591518.2 mRNA upstream 124067 34809871 ~ 34814939 (-) True LOC110510161
XM_036967952.1 mRNA upstream 165392 34851196 ~ 34862398 (-) False LOC110510165
XM_036967951.1 mRNA upstream 165392 34851196 ~ 34862444 (-) False LOC110510165
XM_021591527.2 mRNA upstream 165392 34851196 ~ 34862503 (-) True LOC110510165
TU2489664 other downstream 342604 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 537098 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1172091 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 2039845 32643402 ~ 32644572 (-) True G2176363
TU2487108 other downstream 2250776 32432220 ~ 32433641 (-) True cpi1
TU2489908 other upstream 117387 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 117387 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 1276180 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1818669 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1820736 36506540 ~ 36507120 (-) True G2180120

Expression Profile