RNA id: XM_021591513.2


Basic Information

Item Value
RNA id XM_021591513.2
length 3296
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110510156
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34715939 ~ 34727232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGCCTTTGTGTTCGGCAACAATGACACGTGGGCGATGTTGAATTTGGACAGTTTAGTCCTTGCAGCCCTCCCACTCAACAGAGAAAATATTGACAGTGTTATGGATAACGGAGTTGGTGGCCCCCCTCATCCACCAATTGTATTTTATGGCAACTCGAGATCAATTCAGACTTGTCGTTGAACAAAGACATATCATGGCCGCATCAAACAGCCCACGAGACGTCCAGTCAAAGTTATGGGTCCCAATGATCGTTATTGTCGTGGTTGTACTGCAAGTAGCTTCGACAACTGGACTCCTCGTCTTCTTGAACATGTCAGTTGCTCAGGTGAGGAGTCAAGGGGTGGCTGAGGAGTTACGTTGCCTGGGGCTCCTTAATGCCCTGGAGAAAGACCAGGAGATACCGGAGTCTCTGGTTCAACTGTTTGGGGAGCCCTGCATCAAACTGGCCCAGGGAATAAGAGCCTATGTCACCAAGGTGACAGAAAACATTATTGCAAAACACGCCGTTCCAGAGCCCAGTGCCCAGCCCAGAACCAAGCCCGTCAGTTCTGCAGGGCATCAGAAGCCCTCTGCTCACCTCACACTCCGAGACAGTAGCTTACAGGGCCCTATATCCCTGGCCCCTCAGAAAGACCTGCATCAGTCCTGCCGCCACCCGGTCCGGTCCTGGGGCAACCAGAGTTTCGGCTCCCATCTCCACAACATGACCCTGTCTCATGGACGCCTACGCATCCCCCGGTCCGGACGTTATTACTTGTATGCCCAGGTGTACTTCCGCTATCCCTCCCTCACCCACGAGGGGGGTAACCACCATGGGGGCTCCTCCAGCTACCAGCTGGTCCAGTGTGTCTACAAGAAGACGTCATACGCCAAGCCCCTTCAGTTGCTGAAGGGGGTGGGCACCAAGTGCTGGGCGCCTGACACTGAGTATGCCCTCCACTCTGTCTACCAGGGAGGCCTGTTTGAGCTGAGGGCCGGGGATGAGATCTTTGTTTCTGTGTCGTCGCCTACAGCCGTGCACGCAGAGGACTCATCCAGCTATTTTGGGGCATTTCGATTTGACCCATGAGCATGGAGGTTAAGGAgggaaaagctctctcacacaagAGGATGCtaaacatgtactgtacatagactACAAATCACCATGGTTCTGACATAGCTAGCCACAGACTGGTGCACAGGCCATTAATAAAACTGGCTCACAGATGGCTACATTAGAACTATATATTTCAATAAGAGTGGTGCGGACTAATTGGCATCCCGCTTTGCTACTGTAGCACAATCACAAATAAGAATCTTCAGCACTGAGAGGGATAGTGGAAATGCATAAGACTAAGGAATGTGTGAATTCTTCGATATACAGTATGGCATGCAGCACTACCAACTACCAACGATAACTTTAGCTCTGGGGTCCATATGAAACCACTCTTCAGCCCTGATCTCTCTAGACATACCGGTTGCTTCCCACAATGTACATGTTGCCCCAAGTCTGGGATTTCCAAGACTAGCTCTGATCTGACCTGTAACTTACACTAAATTTGATTTAAATTTTAACATTTGTTTTTGATTTAAACAAGCACTCTTGCACCAGGGTTTTATTTTAGTGTTGAATGTACCTATTGAGAATACAAGCTCTAACTATAGCTAATCATGGATGATTAACAAACAATGGGCTCAAGGGGTAAAAACAAGGAATGGTGAAAGTTCTTCTTGATCCTGGCATAATCTTCTCATTTGTACAAAACCTTATTTAATGGGCGTCGGTAAGGCTCGAAGGGATTTTTGGTAATGGCCCTCTTGGGATTCCTTCATCATACTGAGAATTCTACTATTTATTCCGTTTagcatagggcggtgcacaattggcccagcgtcgtccgagttaggggagggtttggctggggagGCTTTACAAATagtccatcattgtaaataagaatgtgttcttaactgacgtgcctagttaaataaaatagcaATGAACTGCTTTTTTTCAGCAACAACTTTTGATTGTTTTCTGTGGGTGGAGGTATTACTGATTACTGCAGTTAACCAGATATCAGTACTAGTCTTCAGTCATACTCCACTGGACATATGTATCAATTTAACGTCtgtttgattcaaccagtgtgtgcccagtgggacagaGATTCAGCACTGGACAGTAACTTAGTACTACTGTAGACGACTAGCtaataatactataatagtaAGTATAACgcaaacatctagcaacccaaaggttgcttgtttgaatctcatcactgacaactttagcattttagctaattagcaactacttacttttttttttgcaactttgcaactacttagcatgttggCTAACTCTAACCCGTTTAgctaaccttcccctaaccctaacctaactaactaactttaACCCCTAGAGCGAAtgttagccaactagctaaaaTTAGCGGTAGCCaactagccacctagctaacgttaaccgCAACAAAAAATTGCCATAATGTCATACGAAATGAAATGGATATCCCACTAAttaacataccatacgaaacataacatatcatgctaaatacagaataatacaaaatactCCGAGACCATGTTGGCGACAAAGCCTCTACAATTAAGACTGTTGTAATGTTCGCCAAGTTACTCTCAAAGTAAGACCCTAAGTCTGCTCCCTAACAAAGCTGAGTGATGGTAAGAGCTGAAACATGGATTTTTAAAAAAAGCATGAAATTGCCTTGGTCTGTTTTCAAAATATCACTTGTGTCATGACAGCGTTTCCACACGTTGTGtgtcaaaaatattatttgtattttattctgtTGTATTTCATTAAATTCTTAGCCTACTATAAAATATGTATGTTGATTGTGATCAGGGTAGCCTACATGTGTCTTGTCTGTGTAACGAACAAAATAACTATGGATTTCATGTGCATGGCGTAGCCATCTAGCCCATAGACTGCACAGACCAGTCACATAATTAAACCCAATATATGCCATTCTATTaatttgaaaatacattttatttgtcttATGTTTTTTAGGATTTGCCTAAAAACAAATTAATAATGGATTTCTTTGTGACGGTGTAGTCTATATTCAATGGATTTATTAAAATACTATAGATGCCCACCCACATCTACTCCACCCCTGAACTTGCCTTCATGTGCACAGgcgattaaaaaaaaaagagaggccTATCTCGGCAAGAATGTGGTAAAAATTAGATAGTATGAATTGGGTTTTAAAAAACATTGCCCGTTTTATTTTTACAGGCAACATACCTGTGgg

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2489800 lncRNA downstream 30135 34684417 ~ 34685804 (-) False leap-2b
TU2489801 lncRNA downstream 30135 34684417 ~ 34685804 (-) True leap-2b
TU2489852 lncRNA downstream 37032 34678584 ~ 34678907 (-) True G2178326
TU2489837 lncRNA downstream 54695 34658175 ~ 34661244 (-) True G2178313
TU2489836 lncRNA downstream 61319 34654078 ~ 34654620 (-) True G2178312
TU2489894 lncRNA upstream 18925 34746157 ~ 34746483 (-) True G2178362
TU2489913 lncRNA upstream 33531 34760763 ~ 34762133 (-) True G2178374
TU2489916 lncRNA upstream 36014 34763246 ~ 34763490 (-) True G2178377
TU2489919 lncRNA upstream 38680 34765912 ~ 34766184 (-) True G2178380
TU2489922 lncRNA upstream 45480 34772712 ~ 34772942 (-) True G2178383
NM_001124465.1 mRNA downstream 30168 34684419 ~ 34685771 (-) False leap-2b
XM_021591507.2 mRNA downstream 86637 34619958 ~ 34629302 (-) True LOC110510152
XM_021591498.2 mRNA downstream 150798 34546781 ~ 34565141 (-) True hif1al2
XM_036967275.1 mRNA downstream 150799 34546781 ~ 34565140 (-) False hif1al2
XM_036967276.1 mRNA downstream 150807 34546781 ~ 34565132 (-) False hif1al2
XM_021591518.2 mRNA upstream 82639 34809871 ~ 34814939 (-) True LOC110510161
XM_036967952.1 mRNA upstream 123964 34851196 ~ 34862398 (-) False LOC110510165
XM_036967951.1 mRNA upstream 123964 34851196 ~ 34862444 (-) False LOC110510165
XM_021591527.2 mRNA upstream 123964 34851196 ~ 34862503 (-) True LOC110510165
XM_021591532.2 mRNA upstream 237897 34965129 ~ 34979664 (-) False LOC110510171
TU2489664 other downstream 374126 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 568620 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1203613 33511296 ~ 33512326 (-) True G2177695
TU2487607 other downstream 2071367 32643402 ~ 32644572 (-) True G2176363
TU2487108 other downstream 2282298 32432220 ~ 32433641 (-) True cpi1
TU2489908 other upstream 75959 34803191 ~ 34809303 (-) False G2178372
TU2489911 other upstream 75959 34803191 ~ 34809303 (-) True G2178372
TU2491621 other upstream 1234752 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1777241 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1779308 36506540 ~ 36507120 (-) True G2180120

Expression Profile