RNA id: TCONS_00055982


Basic Information

Item Value
RNA id TCONS_00055982
length 3244
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_028922
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 34443650 ~ 34480611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATCCTTtttctctggtgtgtttgtgtgttcagtgtaagATCAgaatcatgtgtgtccagctctgtgtctctgaagagtgacggGTCAATGGGTAAACCACCAGacctcagagagaaaacaccatcatctgccgaAAGtgtggatggagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacagcatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagaccatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagacctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgctttcctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcgaccgtctgacagagattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatcaagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcactgacgcctcagtgtattctgggatctgcactgagatcatcaaggaggaatctgtgattcatcagagaaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacagagaacagagaaccgcTGAGGGTGATTTATGAGAGAGAATATTCATATAATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTATGTTCTGCTCAGTTCAGCAGTAGTTAAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagaggagagctcagagaacatcaggagaatcacacagtacattaaagacgAGATCAAGAGGGATGATGACCCTCCCTCAGCTAAAAGACGCATTAGACGGTTACAGATCAAGAGAGATGACCCTCTCTCAGCTGTAAGacccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaagaCTCAGAGGAGGAACTCACTCCcgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactctaataaattcaacacatcagctgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctgtgagtattcattgattgatcacagaagacacacatcagtctgcactgaagactcagatcagtttagtgaatcactgccctgctttaacagaaaatctttagctggccatatcgtccccctgtgagatcgctgatacaccatattactgcatggggacgcggcggcagtgttctgtttccttatttgctcatttatttcagcatttctaaacgtatttaacaaacttttcttgactttttactcacacaaacaacatttgtacttatttaataatctacttcatttgctttacagtttatcctggaaaataactctaatccctgtaaatccctgtgctcctccagctgaataggacatttgttgatgtgtatttgctcaaatctaacacagtgttgctctgggataattgtgtttgttttctgatcagagaaatagtgtaattttagacacagtattgccgtctcgccgcagacatgcctctaatattacatttactgtaggcctaaacactaaactttacactgagctcagtaaaatgctctctgattagttattaatattctgttcaataattcagtacagtcatatgaatggggaaatacagctttagtttagtttaatgtactttcaataattaaataaatgaataaataaataaaaaagcagatttaaatgaaataatattctTGTTCTGAAAACGCTCATGTGTCTGTAGTATGTCAGCAATTCCTGTAATTCACTACAGTTTTGAGTGTGACTCCTTGTATTTAAtgagaatatttcattcattcagatctaggatgtgttattttagtagtccctttattgtttgagcagtatatatatatatagtttatttccagtgttgcttttatcactgtagactggactcatgaacactcaacactgctcatttcttactgctgattgtgttgctctttgtcctctacacaggctacagggctgtaaactcactgttgagtgctgtgagagtttgtcttcagttctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggagacactgaggtaaatgattctccactctacaaca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184208

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055979 lncRNA downstream 59246 34389152 ~ 34390120 (-) True XLOC_028921
TCONS_00055978 lncRNA downstream 86945 34360774 ~ 34362421 (-) True XLOC_028920
TCONS_00055977 lncRNA downstream 87817 34359175 ~ 34361549 (-) False XLOC_028920
TCONS_00057370 lncRNA downstream 487901 33959375 ~ 33961465 (-) True XLOC_028917
TCONS_00055974 lncRNA downstream 640423 33806333 ~ 33808943 (-) True XLOC_028916
TCONS_00058257 lncRNA upstream 1245 34457093 ~ 34458495 (-) False XLOC_028922
TCONS_00057371 lncRNA upstream 31124 34486972 ~ 34494214 (-) False XLOC_028923
TCONS_00057372 lncRNA upstream 31124 34486972 ~ 34494646 (-) True XLOC_028923
TCONS_00058258 lncRNA upstream 63656 34519504 ~ 34520936 (-) True XLOC_028924
TCONS_00057373 lncRNA upstream 99478 34555326 ~ 34574142 (-) True XLOC_028925
TCONS_00055971 mRNA downstream 685998 33720803 ~ 33763368 (-) False XLOC_028915
TCONS_00055970 mRNA downstream 685998 33720803 ~ 33763368 (-) False XLOC_028915
TCONS_00055972 mRNA downstream 686145 33722076 ~ 33763221 (-) True XLOC_028915
TCONS_00055969 mRNA downstream 924147 33524237 ~ 33525219 (-) True XLOC_028913
TCONS_00055968 mRNA downstream 1043883 33399196 ~ 33405483 (-) True XLOC_028911
TCONS_00055985 mRNA upstream 13129 34468977 ~ 34480599 (-) True XLOC_028922
TCONS_00055987 mRNA upstream 297771 34753619 ~ 34776147 (-) False XLOC_028926
TCONS_00055988 mRNA upstream 298079 34753927 ~ 34775762 (-) True XLOC_028926
TCONS_00055989 mRNA upstream 342777 34798625 ~ 34799395 (-) True XLOC_028927
TCONS_00055993 mRNA upstream 1395241 35851089 ~ 35899188 (-) False XLOC_028936
TCONS_00055976 other downstream 481014 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055975 other downstream 482298 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055967 other downstream 1057445 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055966 other downstream 1058982 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055943 other downstream 2191636 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055986 other upstream 97219 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055991 other upstream 777449 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055992 other upstream 1279158 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00056013 other upstream 2333289 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056015 other upstream 2334331 36790179 ~ 36790965 (-) True XLOC_028946

Expression Profile

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