RNA id: XM_021591532.2


Basic Information

Item Value
RNA id XM_021591532.2
length 3325
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC110510171
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34965129 ~ 34979665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGGTTGGCACGAATGACGGCGTTGACTCTGTAATCAGTGCTCAGTTTTAGCACCTGTTTCCTTATTCCAACTCGAAAGGAAACTTTCGAACTTCATGTTTATCTTCTACGCGGAAAGTTATGAAGCTTTGCATATTTATAGTTTTTTTATTTACAACATCCTTAAAATGCAGAAAGCCTTGAAGAAGTATTTTGTAAACATGGACGAGTATCTAGCCAGCATCGGTCTCTACAGGAAAATGATGGCACGAGACGCGTCCTGTCTATTTCGAGCTGTCTCTGAGCAGATGTATTACTCTCAGAATTACCATCAAAAGATAAGGAAAGACTGTGTCACCTTCATGAGAGAGAACCGATGCAACTTTGAACCTTTTGTTGAAGGGTCGTTTGAGAAGTATCTGGAACGTCTGGAGGACCCCAAGGAAACCACTGGCCAAGTTGAGATAAAGGCTTTGTCGTCGTTGTACAGGCGGTGCTTCCTTGTATACAGGTATCCTGGGAAGCCACCAACGGAGATAACTGAAGTAGACTACATGGAGAAGATTCTGCTGTGTTGCTCCAACAATGGCCATTATGATGTTGTGTACCCCAGGAACTACCCCATCCACGCAGCTCTGTGTCAAGCTGTGTTGTATGAGCTGCTGTACACACAAGTCCTTGGTGTTCGAGAGGCAGAGGTGCAAGGAGCCTTGGAAGGGTTCCATGGCGGAGGTCGTCGCTATAGGAACAGCCTGTCGGTGTGCAGTGAGGATGCAGGCTATGACACCCCTGAGGACAGGGGTCAGACTCTGAGGGATGATTGGGAGTTCAATGTGCACAGTCGCACAGAGGACAAAGCCCGACCTGGAGCAGAGGAAGCAAAGACTCCAGATGGACCAGCAAAACTCTCTCTCCCGTACAAGGTGCTCAAAGCACTGGATTCTGAGATGTACAGAAATGTCCAGTTTGACGTATGGCATGACAGTCGCAGAGAGATGCAGAAAACTGATTACATGGTGTTTGCTGGAAGACAGTACTTCTTGGGAGACAAGTGTCAGGTTCGTCTAGACCCCAAAGGGAAGTATTACAATGCCTTCATTCAGGAGGTGGGCACTCACCCCAGTGCTGTGACAGTGTTCATCGAAGAGCTTGGAGAAAAACATCTTGTGTCTCTGACTAACTTCAAGCCTGTGAACCCTGTCCCTGCCTGGAACATCACCCCGAGCCGCAAGGGACCATCATACAGCCGGCCTGAGCAGTATCCTGGAGAGATGGATTCAGAGTTGCGGGGCCGGCGGCGTTTCTTTAAGAAACCCAGAGGGAAGGAGATGCTGATGGTGTCTGGCCTGCCTCCCCGCTTTCAATCAGGCCCTGGCGGCATACCCCCTGGGCGTGCCCCTGGCATGCAtgcccccacaccaccaccagagACAATGCCCTACGAACACTATCGGCCTCATCTTCCACCCAGGCCCCCGCGAGGATATGGCCCACCCAGAAGTTCAGCCCGTTTCCTGAACAATCATCCCCTCGTTGGGCCGGAGATGACATACTACCCTCACTCAGGAAAACGCTGCTACCACAGCTTCGACAACTACTCATTCAGGTCACGCTCTTGCAGCCGAAGCAGGCGCCAGATCCCTGCTATCAGCAAGGAGTGCCAGTTCAGCTACGTCCCCGAGGCAGGACAGGAGGCACAGGACATGGATGGAACAATCACCTTCTATGAGATTGAGGGGGGAGATGAAACTGCCTTCCCTCCCTTGTCGGGACAGACTGTAGAAAATCCCATGGTTCCAGCACTCCCTACATTCTGGGTGCAGCAGGGGCCGAGCCCCATCCCCACATCTGGTAAACAGGCCATGACCTCATCAGAGGAGGACGCTGACGAGAGGAGCAATGGTGACGACCAGGGTGAATATTCAGAGGAGTACATCTATACTGGTGAAGACACAGGGTTCCAGAGCCCATCAGTGTACGCTGCGGCAGAGTCCACTGCCAACCTGACCATTGAAGAGGGAGGATCTCGTGCTGGCTCACCACAAGAGGGCATGGCTAGTTATAGCTACACTCAGTCACAGCAGGTGGTGGTGAAGTCAGCAGTCATGCCTGCACAGGCTTTAACCACAGCCCCAGCAACTATCTTCACCTCTTCCTCTAGCAGCTCTCAGACCCTTCCAGCACCAATTGCTTCACCCTCAAACTATCCTCAAGGGGCTCCCATGCCCCCACACGCAATGGGCAGACAAGTTTCATCCATTCAggttcctccttcctctccctggtTTGTGAATGAGATGGGGGAAGCGGTCAGCACCATACCCCCTCCACCTTACTCCTATGACCCCAACGGCAACGACCTTCCACGAGATGGCAAGGTCCTCCAATATTACTTTAATTTAGGAGTCCAATGGTACCAGCAGAGCTATTGGCATTCCATGGTACAGATGCAGCAGGCGTATCAGCAGCCTAATGCCGAGCAACAGTTCCAGTCCTACTCCGGAGCCCCCCCTCCCTCTGATCACACAGTCCCCCAGTCCTACCCAGAGACTGGGAGAGCAGGGCCTGATGGCCAGGGAGATGTTCTTGCCAATGGCACCCCCCTGCCCATGGACCCTCCCTCAGCAGGAGCCCCAGGCACAGTGTTCTACCCCTTGGTTCAGGACCAGTGCAGCCAACCCCCCCTCCACACCTATGAGCCTTATGTTCCGATGCTCTCTGCCACCTACCATTACCTCACACCCTGGAACTCAGGCCCTGCCCAACCACATGTGCACGCATCCTACTGCCCCTCCAATCACCCAGTCAACTATGTCACTGCACCCACACACCCAGGGCACTTTATTCCTCCCAGCATGTAACCAAGCACTGGGGGAGGGAGGTGGGCCCCTCTAACTACCCACATTCACCATATTGTCACCCTATGTCATGTGTAACGTTTGTTCCACTTTTCTTCTTTTGAAGTTTGCATGTTTTTCAAGTTTGCTAGTCAGTGGctgtctgaaatggcatcctattcaaaagtagtgcactatgttgggcAGTGGTTCCCATCCTTTTTCAGTTACTGTACTACCAACTGAATTTTGCCCTGAACtacctcatgtgcattttacctgTAGGAcaatggtctcatgagtcttctcaagtacccccagAGGTACTATTACCCCAGTTTGTGTAccactgatgtagggaatagtgcGCCCTtggaaaagtggtgcactatatagggaataggggtccaTTTCAGACACCCGCTGATCCAGTGTTTacagaatgtttaatacattATTTTCATGTTTAATTAATAAAAAGTTTCGTTTCCCAGAAGTCATAAACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2490231 lncRNA downstream 35468 34925642 ~ 34929661 (-) True G2178667
TU2490014 lncRNA downstream 64636 34900276 ~ 34900493 (-) True G2178463
TU2490013 lncRNA downstream 65280 34899604 ~ 34899849 (-) True G2178462
TU2490009 lncRNA downstream 68662 34896153 ~ 34896467 (-) True G2178458
TU2489994 lncRNA downstream 90199 34874436 ~ 34874930 (-) True G2178444
TU2490244 lncRNA upstream 24329 35003993 ~ 35024571 (-) True LOC110510172
TU2490297 lncRNA upstream 29528 35009192 ~ 35010170 (-) False G2178715
TU2490299 lncRNA upstream 29528 35009192 ~ 35010170 (-) False G2178715
TU2490300 lncRNA upstream 29707 35009371 ~ 35010170 (-) True G2178715
TU2490324 lncRNA upstream 104036 35083700 ~ 35084289 (-) True G2178733
XM_021591527.2 mRNA downstream 102626 34851196 ~ 34862503 (-) True LOC110510165
XM_036967951.1 mRNA downstream 102685 34851196 ~ 34862444 (-) False LOC110510165
XM_036967952.1 mRNA downstream 102731 34851196 ~ 34862398 (-) False LOC110510165
XM_021591518.2 mRNA downstream 150190 34809871 ~ 34814939 (-) True LOC110510161
XM_021591513.2 mRNA downstream 237897 34715939 ~ 34727232 (-) True LOC110510156
XM_036967523.1 mRNA upstream 24252 35003916 ~ 35289366 (-) False LOC110510172
XM_036967519.1 mRNA upstream 24252 35003916 ~ 35289535 (-) False LOC110510172
XM_036967520.1 mRNA upstream 24252 35003916 ~ 35289536 (-) False LOC110510172
XM_036967524.1 mRNA upstream 24252 35003916 ~ 35289536 (-) False LOC110510172
XM_036967517.1 mRNA upstream 24252 35003916 ~ 35289537 (-) False LOC110510172
TU2489908 other downstream 155826 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 155826 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 623316 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 817810 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1452803 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 982320 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1524809 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1526876 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 1554433 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 1554433 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile