RNA id: XM_021591545.2


Basic Information

Item Value
RNA id XM_021591545.2
length 3311
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110510176
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35399336 ~ 35421812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCACCCAACTGCTGATAACTTCAGCCAGCCACATCAACGCAGGTCTGACTCTGACAAGTCGTCGACTGCTCTGCCTTTGGGAGTGCATTTGTACTCGCTAAATCCACAGATGAATAGCCTGTCGTAACATCTAAGACATTGCTTTACAActattaattatatatttttaacatCTAGATCGATTGTTATCATGGAACGAAATAGTCGCCTGTTGTTTTGAAGTAGCTAGCTACGACGACTTAATAGCAGCTAGCTCGCTAGCTAAGTCAAGATACTGGTAACTAGCTCCTATCTGAGGTTACGTTGTTTTTCTAAAGGAAAAAAGGTTGCTACGTCTAACTAGCGAATAACAAAAAGCAAACTACGTTAACTAGCtagtctagctagctaaaacTATTATTTAATTGGTTGGCTTTCTGTTCCTTTGGATGCGGAAGATGGCCCAGTCACCGGGTGCGGTGCAAGTGCCTGGGATGCAGAACAGCCGGACGGACCCTGAGGAGCTGTTCACCAAGCTGGAGCGTATTGGGAAGGGCTCCTTTGGCGAGGTGTTCAAGGGCATCGACAACCGCACCCAGAAAGTGGTGGCCATCAAGACCATAGACCTGGAGGAAGCTGAGGATGAGATGGAGGACATCCAGCAGGAGATCACCGTGCTCAGCCAGTGTGACAGCCCCTACGTCACCAAGTACTACGGCTCCTACCTCAAGGGCAGTAAACTATGGATCATTATGGAGTACCTTGGTGGTGGCTCAGCTCTGGACCTGcTGCGAGCAGGGCCCTTTGATGAGTTCCAGATTGCCACCATGCTGAAGGAGATCTTGAAGGGCCTGGACTACCTCCACTCCGAGAGGAAGATCCACAGAGATATCAAAGCGGCCAACGTTCTTCTGTCAGAGTGTGGCGAGGTGAAACTGGCAGACTTTGGCGTGGCGGGCCAGCTGACAGACACCCAGATCAAGCGGGAGACGTTTGTGGGAACGCCCTTCTGGATGGCCCCCGAGGTCATCCAACAGTCTGCCTACGACCACAAGGCTGATATCTGGTCTCTGGGCATCACTGCCATCGAGCTGGCCAAGGGTGAGCCTCCCAACTCAGACATGCACCCTATGCGGGTCCTCTTCCTCATACCAAAGAACACCCCACCCACACTCAGTGGAGATTTCTCCAAGACCTTCAAAGACTTTATAGACTCCTGCCTCAACAAAGACCCTTCATTTAGGCCAACAGCTAAGGAGCTTCTGAAGCACAAGTTCATAGTGAAGAATGCCAAGAGGACGTCCTACCTCACTGAGCTGATAGACCGGTTGAAACGCTGGAAGGCCGAGGGACACAGTGATGGAGACTCCAGCTCTGATGACTCTGACTCGGAGTCCAGTAACAAGGAGAACAACTCCTCCCAGCCAGGCTGGTCCTTTACTACAGTTCGCAAGAAGAAAGACCCTAAGAAGGTTTCCAATGGAACGGACCAAGACCTCCTGAAGAAATCTACCAGCTTGACCACGCTGATTGCCCCAGTATTCACTGAGCTGAAGCTGCAgcgcagggatggagagatgaagggagtgaTGGAGGACTTGGAGAAAAGCATCCACCTGGCTGAGGACATCTGCCCCGGAGTCACAGACAAGATGGTCAACCGCATCGTCGACAAGTTCCAGAGATTGTCTGTCAGTTAGTGGCATGTGGAGGGCAGGTTTAGACGCTTGATGAGGACCACGCCTCCAGAGTGCATCATCAGCCTCTATGCCTTTTCCCATCATCCCCCATTCCTTTTCCCATCATCCCCCATGCCTCTCCTCTGATCAGCTCCCCCAGGACCAATGGAtgcagggaaagagggaggactCCTGCTGTGCACACTCACTGATCTTATAACCAAAaggatattttttaaatgtatttgttgaatatgttttgtttttctattttatttaatCCCTTTAAAAGTAGGCTCAAGCTAGTGCCCAAAGCAGAGCCTGTTACTGTTATGGTAGTCAATAGTATTTTAGTTTTGTAATATTTTCAGTctgagacaacaacaaaaaactctaAGGTTGCAACATCAATCTTCTGCTGAGTATAAGACATAGCTACTTAAAGATATTTCAATTTTGAATTAATTTTTTACTGCTACTAAAAATGTTTAAGTAGCTATATTTTAGATGTTCAGTGTACTGCACTTGTTTCTGATGTCTAGCTTACCATCTTCATGTCACTTGTAGCATTTAGAAACCTGCTGTTTGGAGAACTGCATATCTAGTCAAACCACAGGAGTTCAGTACCTCTCTGCTGAGAGCAAGCCATGGTTGAGGAAAGACTCAGACCCAGTGAATGTCCATAGAAACAAAACTTCTGTTTGTGACCATTTGGAAACGGGTCACTTGTTTGGGCATTGGGGAAAGATTGTATAGGAAATGGGTGGAGGACTTTGCTGCGCAAAAATGTATCACACCCTCTCATTCCAAAAGATACAAATCATATCTATCTTATGGGATCTTAGCTCTGTAAGGGGCAATCCTATTGGAACCTTCGGAGATCTGCTTCTGAAGGAAATATGCACTGCACACACTTTGAAGGGGGTGGAGCTTTTTCTAAATATACTTGCTAGTTATTTCCCTGTTTCAGACTAGATCTCATGGGAGACGGGGTACTTTTCTGTCTTAAAGACAATATACTCTCCCTCTACCAAAAAATACTTGAGTGCTCAAGTGAAATGGCAATGTCGGTATTGTGGACGTGTAATGTTTGAAACATTGGTATGAGTCCTTGAGTACTCTCTCTACTGGGGAGTCGTGTATCTTTGAACAAATCCCAAATAAAGACTTTTATTGGGAATTTTATCAGCCAAGCTCAAATGCATACAAAAGGGTGCCATCTTTGGTGTGGTGATGACACTGCACCTTTTGGAGGAAGTATGCCAACTTAACATCCAACAGTGCCTAAAACTTAAGAATTGCAGTGATATTCTCTATTTAAACTTAAGAATTGCAGTGATATTCTCTATTTAATTGTGGTCATGTATCATCAAATGCATTAAATGGTAATAATACATTTTGCCAGAGTGTTTCAAGTTTTTAAAAGCAATAAGGTATTTGATCATTGCATATTTTTATATTTCCTCAAATGACATTCAGATGGCAAAACTacgattttttttgtttatagaTTTCTGTATCTGAACTTTATAATGGAAACCGTGTTGACTTAGCTTTACAGGAAGCTGTCAAATGTACATATTGGATAGTCTTTGCTTCAATCGTTATTCATTTTGGTTTGGTcttgaaaaataaatatttaaattaTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2490797 lncRNA downstream 10088 35388615 ~ 35389248 (-) True G2179169
TU2490795 lncRNA downstream 11601 35387487 ~ 35387735 (-) True G2179167
TU2490790 lncRNA downstream 24319 35374526 ~ 35375017 (-) True G2179162
TU2490786 lncRNA downstream 30354 35368691 ~ 35368982 (-) True G2179158
TU2490784 lncRNA downstream 34682 35364365 ~ 35364654 (-) True G2179156
TU2490835 lncRNA upstream 50818 35472628 ~ 35473365 (-) True G2179204
TU2490845 lncRNA upstream 59245 35481055 ~ 35483881 (-) True G2179211
TU2490762 lncRNA upstream 82540 35504350 ~ 35506878 (-) True G2179135
TU2490864 lncRNA upstream 119007 35540817 ~ 35542952 (-) True G2179228
TU2490929 lncRNA upstream 230239 35652049 ~ 35655274 (-) False G2179286
XM_036967716.1 mRNA downstream 30774 35349365 ~ 35368562 (-) True LOC118945291
XM_036967521.1 mRNA downstream 109798 35003916 ~ 35289538 (-) False LOC110510172
XM_036967517.1 mRNA downstream 109799 35003916 ~ 35289537 (-) False LOC110510172
XM_036967518.1 mRNA downstream 109799 35003916 ~ 35289537 (-) False LOC110510172
XM_036967522.1 mRNA downstream 109799 35003916 ~ 35289537 (-) False LOC110510172
XM_036968005.1 mRNA upstream 156 35421966 ~ 35454523 (-) False LOC110510173
XM_036968004.1 mRNA upstream 156 35421966 ~ 35454525 (-) True LOC110510173
XM_021591553.2 mRNA upstream 73475 35495285 ~ 35505716 (-) True ik
XM_021591551.2 mRNA upstream 85237 35507047 ~ 35524067 (-) False LOC110510180
XM_036968003.1 mRNA upstream 85237 35507047 ~ 35524067 (-) True LOC110510180
TU2489908 other downstream 590033 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 590033 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1057523 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1252017 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1887010 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 540174 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 1082663 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 1084730 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 1112287 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 1112287 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile