RNA id: XM_021591551.2


Basic Information

Item Value
RNA id XM_021591551.2
length 4994
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC110510180
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35507047 ~ 35524067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCACTACATGTCCCATCATGCACATCGAAGGGGGCGTAGTCGCTGTAAGTACATGGCAAATTCCTGCAGACAGTGAGGATGAAGAGCTCTTAATCAATAGATTAAAGCCATTTAATTGATTATTTTGATTGTGCTAGTCGTTCTACCTTAAAACGATGACTTCAAAGGACCCGAGTGCATCAAATAGTGCCTTGCTTTATTTGATTTATCAGCATTTAAAGGAGAATGGTTACCAGAAGGCTGCAAACGTGCTGAAAAAACATGTAACTCAGATGGAAGCACCAGAAGAGATCACCTCTTTACATGACATCTACACAAGTTGGACCAAGGTCTCGGAAATTGGACAAAATCCAAAACAAGAGCCTGAAGTGGATTCCACCACCCTGAAGAAGATTAAGGCCGATCCATCAACCAAAGAAGAAGATGTGGACTCAAAACCAATTGATTCTCTACCTCCTGCCCCCCACACACCCCAGGGTGCAACCCCAGAGAATGAGGAGCCGGTCCCAGAGGATGAGTTGTCATCTACTCCAGTCAGTAACGGGACAGTGGAAACATCAGCCCCTGTACCAGCGGTCACCCCTTTAAAACCAGCAGTGAGCTCAGACAGTGACTCTGAGAGCAAGGAGGAGATTCCCCTCACACAGGGAGATACTGTCACCCCAAAGGCCTCTTCAGCTGTCCCTACCACCACGCCCTCAAAACATGTAGACGGGAACAGCGAATCAGACAGTGAGAATGAGATTCATCCATCACAGACTGTTGTCATTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGACTCCAGCCATCCCCACAGCTCCCAGTAAAGCAGAGACCTCAGACAGTGAAGAGGAGGTTACTGTCAAGAAACTAGCATCTACGGCTGCTCTTGTGAAACCAGCCAAGGCGATCCCAGCAGTCCCAGTAAAGCCCAGTGTAGTCACCCCCAGTCAGGCTACAGCTGCTCCCAAGACTCTTGCTGCAGGGAAGAAAACACAGAGCTCTGACAGTGACAGCTCTGACtcagagagtgaggaggaggctCCTAAAAAGAAACCTGTGGCGACACCCAAAGCCAAGGCTGTGGCTGCAACTCTGGTCAAGACAGAAGCAGTGAAATCCAACCCTATTAAAAAACCAACAAACAGCTCAGACAGTGACAGTGATGACACTGAAGAGGAGGCTCCTGTAAAGAATCCTGCACTGACACCCAAAGCTGCTCCTGTGAAACCAGCCAAGGCGAGCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGTTGCTCCCAAGACTACTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGaAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGTAGCCCCAGTGAAGCCCAGTGTAGTCACCCCCAGTCAGGCTAAAGCTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGAAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGTTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGaAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGCTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAGGAGGAGGCTCCTAAGACTCCTGCTACAGTCATAGAGGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCagtaagactccagccacccctaCAGCTCCCAGTAAAGCAGAGACCTCAGACAGTGTCACCTCAGACAGTGAAGAGGAGGTTACTGTCAAGAAACCTGCACAGACACCCAAAGCTGCTCCTGTGAAAACAGCCAAGGCGAGCCCAGTGAAACCCAGTGAAGTCACCCCGAGTCAGGCTAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAACCCAGTGCAGTCACCCCCAGTGCTCCCAAGACTCCTGCTGCAGGGAAGAAAACACAGAGCTCTGACAGCGACAGCTCCGACTCAGACAGTGAGGAGGAGGCTCCTGTAAAGAAAACCACCCCCGTCTCAACCCCAAGCAAGGCCAAAGCCTCTCCTAAGACCCCAGCAGCAGCTGCTAAGATGGAGACTGACAGCTCAGATTCCTCTGACAGTGAGGATGAGGCTCCAGCCAGGCAGGCCCCTGCCAAGCCCACTCCCAGCCCGGCTAAAACCACACCCAAGGCCCCTGCTGCAGCTAAGAAGGCCGACAGCTCGGACAGTGATGAGTCTGACACTGAGGAGGGCAAGCCAGCTAAAAAGGTCACTGCTACCTCCGTAGCCAAACCTTCAACTCCAGTACAGGAGGAGGACAAAGATTCCTCAGACAGTGAGGATGAAGAAACACCATCGAAACCAGAATCCACACCATCTGAGAAATCTGTCACGCAAACCCAGGCAACGCCTCCTGCTGGCAAGGAGGGAGGTACAGAGGAACACATTCCAGCAGAGAAGGTTGAGGCTGTTCGAGTCATACCTACAACTGAAACAGCAGCTGAGGAAAACAGCGGTGATGATCCAACCGATACTGAAGGATCTCCTCCTGAAGTCCCTGAGGTGGACACACCCCCTGCCTCTGGGCCAGAGAGTGcaaaggaggaggaggtcccagAGAGTCCCCAGAAGGTCCTAAAGACGGACACTTCTTCAGAGAAGCCCAAGACAGAGGATCAGATAGTGACCTCTACAACATCAGAGGACAAGAGTGACACCCCTGAACTCCCATCAGAAGCCCCTGCTACGGCTGCTGAGATCAGAACTGCTTTAGAAGAGGAGTCAAAGGACTGTGTTGACCCAGTTATCACCAATTCAGCATCTGAAGACTCGGAGCCTGAAAAAGTGACCATTGAGACAGTTGTTGAGACAATccccacagagacagaggagccaAACACTGATACCCCAACACCTGGAtcaaagaggaagaggagtaaAGAGACAACGGACGCAACtcccaagaagaagaagatgaagaggaagaagaagggggAGGTTGAAGAGAATGGGCAGCCTGCAGTAGAGGAGGATGGGGATGAGTCCAGTCTGGACACAAAGGGGTTGGAGCTGACTCCATCAGACGATTCCAAGGTGGATACCATCCCGGCTTCAGAGTCTGACTCCACCACTCTTGTTCTGTCAGCAAAGTCACTCAAGAAAAGGAAAAGAAAGAGGGTGAAGAAAAGAAGAGGTGCGAAGGCCGAGAGGGAGTCACCGGAAGAGGACAAAAAAACAGACTTCgtcccaaaaaataaaaaaataaaaaagagcaAGAAAAACACAACATCCAACCTGACACCACCAACCAACAACCAGACCAAGGAAACTCCAAAGACCACAGCTGCTAAGAGGCCTCTTCCTCCCACCCCTGAGCCGGAGGAGCTAGAGACtcccaaaaagaagaagaagaagaaagtcGCAGAGAAAGGGAGCGCTGTGAAGGAAAATACAACTCCAGGCATTGAAACAAAGAAGAACAAGAAAGTTGCAGAGAAAAGGAGCGCTGTGAAGGAAAATACTCCAGGCATtgaaacaaagaagaagaaggcTGCTAAAGCTGAAAACACTGTGAAAGACTCTGCAATCTCAACTCCTGAACCGAGCCTTACACCAGAGACCCCAAAAAACAAAAAGAAGAAAAACAAGCTGACAGAGAAAAAGGAGAAAATGAAAACTGCATGGAAAACACCGGTAAAAGCCTCAACAGGACCTTTGCCTAACACAGAAGTCACTAAGAAAAATAAGTCCTCCAAAAAGAAATAATCCAATGGTGAAATTTCAGGAGATGGTGGATATCTTCTCCAGGGAATGAAATGGAGCTGCCAACGTCAATCAGAAGACCACCTCGATCACACTGGTGCCTGAGGTTTCAACCAAAAGAAGGGGAAACTGGAGTTCTGGCCTGTACATGTACTTTAGGTTCTACACATGTATTTTAGGGGAACATCTGTATTGTGTTACTAACAACACAATCTATGTTTTAACCATATATTCTATAAGCTTGCTAAACCAGGCATGTATTGACATGAAAAAGGCAAAATAATCATACCATTCTATTTGAAATGTTGAATAAACGGGACACAGAAACTAACACATTTGCACAGCCTGATGGAACGTAAACCCATCTTCAGTGTATTTGCCAAGTCCTAACCAATGGTAAAACAATCATTAGGTATTAATATGTCCTTGGTCTAGCATTGCTGTCTTGATAATGTTGTAGGGTGTAGTACTCTTGCATGTTGTGGGTTTTCATTTCTGTTCTTTAAGCTGTGAACACTTCCACATAATTGTGTGTAAGGTAAGGGATTGTTAGGACTCAAAATGGGGAACACTTGTAGCAAATGTCACTCCAAATACTGTACTATGCACCTCACGAATCCTATTGCTGAGCCCATAGCCTTGTGTTTTAGCACTTATGTTAGACCCATACACCTATGCAGAGGAAGGTTCTGGGGGACCAGAGGAGGATAGCTGATCTGACTGACTCAGAGAATTTGCTGAACTCCCATGTTTACAAACCAGTATTTGTGTCACATTCTTGTGAAAACAAACTTTTCTTCCATTTGTCATTTTCTGATTGTTCATTATCAATAAAAATGGTTTAATCTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2490762 lncRNA downstream 169 35504350 ~ 35506878 (-) True G2179135
TU2490845 lncRNA downstream 23166 35481055 ~ 35483881 (-) True G2179211
TU2490835 lncRNA downstream 33682 35472628 ~ 35473365 (-) True G2179204
TU2490808 lncRNA downstream 38773 35403440 ~ 35468274 (-) True G2179178
TU2490797 lncRNA downstream 117799 35388615 ~ 35389248 (-) True G2179169
TU2490864 lncRNA upstream 16750 35540817 ~ 35542952 (-) True G2179228
TU2490929 lncRNA upstream 127982 35652049 ~ 35655274 (-) False G2179286
TU2490930 lncRNA upstream 127982 35652049 ~ 35655274 (-) False G2179286
TU2490931 lncRNA upstream 127982 35652049 ~ 35655274 (-) False G2179286
TU2490932 lncRNA upstream 127982 35652049 ~ 35655274 (-) False G2179286
XM_021591553.2 mRNA downstream 1331 35495285 ~ 35505716 (-) True ik
XM_036968004.1 mRNA downstream 52522 35421966 ~ 35454525 (-) True LOC110510173
XM_036968005.1 mRNA downstream 52524 35421966 ~ 35454523 (-) False LOC110510173
XM_021591544.2 mRNA downstream 85235 35399336 ~ 35421812 (-) True LOC110510176
XM_021591545.2 mRNA downstream 85237 35399336 ~ 35421810 (-) False LOC110510176
XM_021591616.2 mRNA upstream 282396 35806463 ~ 35817492 (-) False LOC110510228
XR_002471541.2 mRNA upstream 291192 35815259 ~ 35817471 (-) False LOC110510228
XM_036967330.1 mRNA upstream 317076 35841143 ~ 35871509 (-) False LOC110510227
XM_036967329.1 mRNA upstream 317076 35841143 ~ 35871517 (-) False LOC110510227
XM_021591615.2 mRNA upstream 331379 35855446 ~ 35871513 (-) True LOC110510227
TU2489908 other downstream 697744 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 697744 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1165234 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1359728 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 1994721 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 437917 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 980406 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 982473 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 1010030 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 1010030 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile