RNA id: TCONS_00057371


Basic Information

Item Value
RNA id TCONS_00057371
length 729
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_028923
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 34486972 ~ 34494646 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCATCAAAAACTCTCTGCCTATTTATTGAAAGCTGAAGGGCTGCTACAGTAAAACTCGCTGCTACACATGGCGTTTGCATCGCGTTGGTGATTCATCACATGAGTGTCATGTTACAAGCCTTCATCTTGTCTGTGGCACTGCATGGCATCTACAAGAGACTGAATCTACACTAGGACGGCGACTTTACACGGTTAACTGGGAAAACTCTTCATGAAAGACTGAAAGGTGACTGCAAACAAACGTTGTGGACTCAGAGCAGGTTGCTGATTTAAGTTGTAGACAGACAAAATGGACGACACAGCAGAGCAAATGGCAGCACAAGCAAGTCAAAGGTACAGCTCGGAAGAATGCCTTGAGCTTTTAGTGTCCCTTCGGCAAGCAGAGCGaggtatgttttgtttattgtttgatttatttggaaaatgttagatgttttgtaaatgtttgttgtttatttttctatgttgtttgtttgttttctctagTTTTACGGTGCTTTTGGTGCCTTTGGTCTTTTGATGCTTCTGTGTATACAACAAAGAACTGAGACGATGATTTATGTGATGAACTTTATTGCATCCAAGTAAACCCTTTTAAATGCACCTGTCAAAAACTCTCTGCCTATTTATCGAAAGCTGAAGGGCtgctacaaataaaatatataacaaatgcatgagagaaataagaggaaatgagaggttactataaacataaaaacgaacaggtc

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058257 lncRNA downstream 28477 34457093 ~ 34458495 (-) False XLOC_028922
TCONS_00055979 lncRNA downstream 96852 34389152 ~ 34390120 (-) True XLOC_028921
TCONS_00055978 lncRNA downstream 124551 34360774 ~ 34362421 (-) True XLOC_028920
TCONS_00055977 lncRNA downstream 125423 34359175 ~ 34361549 (-) False XLOC_028920
TCONS_00057370 lncRNA downstream 525507 33959375 ~ 33961465 (-) True XLOC_028917
TCONS_00058258 lncRNA upstream 25290 34519504 ~ 34520936 (-) True XLOC_028924
TCONS_00057373 lncRNA upstream 61112 34555326 ~ 34574142 (-) True XLOC_028925
TCONS_00058259 lncRNA upstream 303579 34797793 ~ 34798843 (-) False XLOC_028927
TCONS_00058261 lncRNA upstream 353546 34847760 ~ 34857130 (-) False XLOC_028928
TCONS_00058260 lncRNA upstream 353546 34847760 ~ 34857130 (-) False XLOC_028928
TCONS_00055984 mRNA downstream 6361 34449366 ~ 34480611 (-) False XLOC_028922
TCONS_00055985 mRNA downstream 6373 34468977 ~ 34480599 (-) True XLOC_028922
TCONS_00055983 mRNA downstream 26671 34449366 ~ 34460301 (-) False XLOC_028922
TCONS_00055980 mRNA downstream 27354 34443650 ~ 34459618 (-) False XLOC_028922
TCONS_00055981 mRNA downstream 27357 34443782 ~ 34459615 (-) False XLOC_028922
TCONS_00055987 mRNA upstream 259405 34753619 ~ 34776147 (-) False XLOC_028926
TCONS_00055988 mRNA upstream 259713 34753927 ~ 34775762 (-) True XLOC_028926
TCONS_00055989 mRNA upstream 304411 34798625 ~ 34799395 (-) True XLOC_028927
TCONS_00055993 mRNA upstream 1356875 35851089 ~ 35899188 (-) False XLOC_028936
TCONS_00055994 mRNA upstream 1398646 35892860 ~ 35900331 (-) False XLOC_028936
TCONS_00055976 other downstream 518620 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055975 other downstream 519904 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055967 other downstream 1095051 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055966 other downstream 1096588 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055943 other downstream 2229242 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055986 other upstream 58853 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055991 other upstream 739083 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055992 other upstream 1240792 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00056013 other upstream 2294923 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056015 other upstream 2295965 36790179 ~ 36790965 (-) True XLOC_028946

Expression Profile

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