RNA id: TU2491542


Basic Information

Item Value
RNA id TU2491542
length 2899
lncRNA type sense_over
GC content 0.39
exon number 4
gene id LOC110510228
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35804621 ~ 35817492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACCTCTTTGGCACAGACGCATCTTTTCATCTGAAGACCTTGACAATCAGTGCAGTTAAGTCTAACCTACAAAACCTGCAAGAAAAGACTGAGAAAATGGGTGGCAGCCATACAGTTGAAGTGGACCATGAATCCCGACAACGGGCAGACCTGGCAGAAGCAGAAAAGAGAAGATTTGAGCAGGAATGCCTCCGGCTCAAGGGGGAGAAAGCGCGAATGGAAACAGAACAACGGATGGAAAAAGAACAacgagaggggttggagaggcaGAGAAAAATACAACTTCAATCCCAAAGAAAGCAAGAGGAAGATGAAAGGATCAGGATACATAAAGAACTGACAGCATCAAAATAAAGAGATAAAACGGAGGGAAAAGTAGATGATTAAACCGTAGAAACTAGATTGATGAGTAGACTACTAGAGAATATTGTTAATTGATGAAAACATTATTCTGAACACGGCAGCAGCTAAAAGTCACGTTAAATTACTGTAACTATAAGGAGCAGTCTTTCTATATTCTAACATCTTTTAAAGGAAAAGCTCCTTTAACAGAGAATAATTAAATGGCTGAACAGAGTATAATTAAATTGCGATAGAACAATTATACGAGAACAAATCAGAGTCAGAAAGAAATCTCATTCAGGACGAATTCGAATGAGTCCAGATGGAGAAAGTAGATGGAAGAACAACTGAATCAGGACCAACGCAAGAGGAGAGGAAATCTATTGAATCCCAAAGAAAGCAGGACAAAATGCATATGTGGCAAACAAAAGAGACTATTAACTCAAATGATTGGATATTTTGAGCAATAAAAGCAAGTTTATGAGGCCTTACCTTGTAATGTTCTTCTCTTGTCTGGCGGTAGCAGTAAGTCCTGTGATTATCCAAGCAAATGTGTAAATGTAGTCAGATGTAGCTTCAAGTCATCTAATACAGTCTAGATCTTTTGCCCACATCCTGTGGGAATTAAATGGAGACATACTTTTTTACAGATACAATTTAAGgcaaactttgtgaaaaaaaATGTTACGACCAATCTTACCAATCACATTTGATtgactttgttttttttttgttggttcaAACTGTATTGCCCAATAAGAGGAACCTGGTCTCATCACACACCGTCATATATTTTTGCTACAACTGAATAAACTATCATTCATATTTCTGCATCTGTTATTATCTcgatttttttgtttatttttttgtgtaaAGATTTTTTATTTACATTATTGATCTAATTAAAGTGCAAATAATTTTACATgtactttttaaatgtttatgtTGATacctttaaaacatgttttttccccctctggctTTGGCTAAAGTATAGATTATGATTAAATCAATTATTCAGGTGtgctggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcattttgagatatcagctgatgtacgaggggctatatgaatacatttgatttgatttgatttactttaTGGGGCCTTATAAAGATAATGTAGGTCTGATGGCCGTTCCAAAGATTCTGTTTCCATATATGACTATCAGTCACTCCTCCCTTACACAATTATAATTACACCAGCAGAAAAACAGTGTGCAGTTCTTGAAATGAACTTAACACAAGGTTCCCATGCCACTGTGGACTCTGAGACCACAGAGCTCATGCTCACTTGGGATAATGTTTATGACTGAAGAACAGCATTTATACTACATTATCTTATTTTTTTCTGATGTTTCCCCATTACAGAGGCGCAGCTTGCATTATCGAACGCTGAGCATCAAGGCTCTGGGCTCGCCTCCCATCCCAGGAGAACAATACAAGACTGAGGGGGAGGCAGAAATAACACGGAGTCATGTCTGACTCTGAGACCATTGAGACAGCCGCTCTGGGCCGACCATTCCAGCTGGGGATGCTGTATGACTGTCGCAGGGATGTCCTCATTCCAGgacaatgacccaacacacctccaggctgtgtaagggctattttaccaagatggaaagtgatggagtgcggcagcagatgacctggcctcacaATCCCCTGATCTCaatcaaattgagatggtttggtatgagtcggactgcagagtgaaggaatagcagccaacaagtgctcagcatatgtggaaacttctttaagactgttggaagaacattccaggtgaagctggtagagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctattagaagaatatcaaatatattttgatttgtttaacacttttttggttactacctgattccatgtgttatttcatagttttcatgtcttcacaatttttctacaatgtagaaaatactaaaaataaagaaaaacacttgaatgagtaggtgctctAAAACTATTGACCGGTAGTTTATATGCTACGGGTCAAGGAAGGGTAAAGAGGAACTAGATGTGAGTGAAAGTTACTGTGAGAGGAAAGGGGAATACAGTAGATGACCCAGGTCTGTTGAGTGAAGTGAACACAAGGTCACTGATAAACATCATGGAGAAGTGACCTGATAAAGAGGAACTGCTAGCAGACGGTTCGACTGCGAAGACAACAGAGCAACATCTAGGCAGTGTTGGGTAGCTGATAGCAGTTCTGAAAAAGTTACACTAATCTCATCTTGACATATAAAAGCCTGTTTGATCATGTGCAAAATGTCTTTGCAGCTGTATGACTCATGCTTTGTCTTTCAAGTTAACCTTGGGATATATgcctaaaaatatgtttttttcatgTCAGTATTGCTTTGATATTAAACTTCATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491048 lncRNA downstream 1027 35803344 ~ 35803594 (-) True G2179379
TU2491045 lncRNA downstream 3052 35801334 ~ 35801569 (-) True G2179376
TU2490997 lncRNA downstream 22603 35778751 ~ 35782018 (-) True G2179330
TU2491025 lncRNA downstream 32391 35763005 ~ 35772230 (-) True G2179356
TU2490995 lncRNA downstream 44878 35753566 ~ 35759743 (-) False G2179328
TU2491554 lncRNA upstream 21036 35838398 ~ 35839853 (-) True G2179806
TU2491579 lncRNA upstream 42638 35860000 ~ 35860404 (-) True G2179829
TU2491551 lncRNA upstream 56859 35874221 ~ 35905514 (-) True G2179803
TU2491538 lncRNA upstream 71620 35888982 ~ 35892698 (-) False G2179798
TU2491539 lncRNA upstream 71620 35888982 ~ 35892698 (-) True G2179798
XM_021591551.2 mRNA downstream 280554 35507047 ~ 35524067 (-) False LOC110510180
XM_036968003.1 mRNA downstream 280554 35507047 ~ 35524067 (-) True LOC110510180
XM_021591553.2 mRNA downstream 298905 35495285 ~ 35505716 (-) True ik
XM_036968004.1 mRNA downstream 350096 35421966 ~ 35454525 (-) True LOC110510173
XM_036968005.1 mRNA downstream 350098 35421966 ~ 35454523 (-) False LOC110510173
XM_036967330.1 mRNA upstream 23781 35841143 ~ 35871509 (-) False LOC110510227
XM_036967329.1 mRNA upstream 23781 35841143 ~ 35871517 (-) False LOC110510227
XM_021591615.2 mRNA upstream 38084 35855446 ~ 35871513 (-) True LOC110510227
XR_002471540.2 mRNA upstream 70629 35887991 ~ 35892732 (-) False LOC110510226
XR_005040355.1 mRNA upstream 70629 35887991 ~ 35892734 (-) True LOC110510226
TU2489908 other downstream 995318 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 995318 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1462808 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1657302 34121482 ~ 34147319 (-) False G2177991
TU2489160 other downstream 2292295 33511296 ~ 33512326 (-) True G2177695
TU2491621 other upstream 144622 35961984 ~ 35962832 (-) True G2179862
TU2491931 other upstream 687111 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 689178 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 716735 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 716735 36534097 ~ 36596373 (-) True LOC110510209

Expression Profile