RNA id: XM_036968056.1


Basic Information

Item Value
RNA id XM_036968056.1
length 4762
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110509452
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35969456 ~ 36032625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATCACGGTCTCACCTACACCTCTGCTCAGAGCCGCGACGCCCCTCCCTCTCCCGGTCCACACCGATAAATGGGTTAATGCTGTCACCAGGAGAAGACAAATGAACCGAGCACACACAACAGGAGATCCCTTTCTCCCGAACTAACCCCTCTTCGCTCGCCGTTGCTGCTTTATCGATTGAGAAGAAACATTCTCCTTCATTTGTTTTTGTGATTCGGAAAATATTTGATCTGCAAGCTTTATTGAGACAGAGAAGCGGACTGGTATCACCGGCGCTCCAGATCCGTGGGCGACTGGGCAGGGaggtgtctgtcggtctgtctgctgCAGGAGTGAATCATTGCGTCGGGGCTCGGAAGATTAGACACCCCGCTTATCACCACTCCAACTCCCGGAGGTCTCTGATGGTATTTGGAGATAGAGACGGATAAGTGAGCCAATTCAAATAGATTACAACTAAACTGATATCGTCTGTGCACCTATTAAGTAGCCTGCCCTATAGGATTTTAAATGGGGTTTTAAAAAGGCACTACAAGTCTCACTGGAGACTTGGATCAGTGACGTTTTGGCGTTTGCCATATCAGGTGATCTTGAAGAGTGAAAAGAAAAGATTTGAAGATCATTACATTTTGGGGGGGATCCCAATCACTTCCAGAAAATAGCTGTCTGATATGAGTGTAAACAGAGTCGAGTCTGGGTGACCCCCCTAGCCTGATAAAAACGGATTGAATCTTAATTGACCGGATCAGCGTCTTAACAGAGAGAAGATGCCGTTCCACCACGTCaggtctactctgctctacacTGGAAGTCTCCTGAGCCGGACACTGTCTGAAGGGAGCGAAACCTTCCAACTCACcagcatctccacagaggagctaggagAGATCCGGGAGGCGTTCCGGGTGCTGGACCGGGATGGGAACGGGTTCATCTCTAAGCAGGAGCTGGGCATGGCTATGAGATCCCTGGGGTACATGCCCAGTGAGGTGGAGCTGGCCATCATCATGCAGAGACTAGACATGGATGgtgatGGTCAGGTTGACTTTGAGGAGTTTGTGACGATATTGGGACCCAAACTGCTGTCGTCTGAGACCAGAGAAGGTTTCCTTGGAAGCACCATCGATAACATCTTCTGGCAGTTTGACATACAGCAGATGTCCCTGGACGAGCTGAAGCAGGTTCTGTTTCACGCATTCCGAGACCACCTGACGATGAAGGACATCGAGAACATCATCATCAACGAAGAGGAGAGCCTCAACGAGACAGGGAACTGCCCCGAGTacgagggagTCCATCCTAAGAAGAAGAACAGACAGACATGCGTGAGGAAGAGCCTGATCTGCGCCTTTGCCATGGCCTTCATCATCAGCGTCATGCTCATCGCGGCCAATCAGATGCTGCGGAACGGCATGGAGTAAGCCAATCACACTGTGAGCCTGGGGAGTGGGCCTTACAGTTAAATgacctcacttcctctctctgcagcaaAAACAGGAAGACAGACCAGCCAGAACCCAAACACCTCTGTGAAGGACAACTATCTGTTATTTTAATGACGTTTGTTTTGATTTATATCATGAACAGTAAACAGACAAGAGAGTGCAAGTACTGAAGGACACACACGGAAAATGTCATTTTCAGTGGAAAaaaagacaaatcaaatcaaaaacacTAAGAGGACTTGATGAACAGACTGGACATGATACAAAGCAATCTTTTATATTTTGTGGGCATAAAGGGATTCCTTTCATTTCTGTATCAGAGAAGGCCACCCCTTTTAGAATGATTTTCTAACCACCcctttaaaataaatgttttgtttttttacctccTATTTAAAAGATCAATTGTCTAATCAAAAGCAATCTATTGAACATGCATCAGGTGCTTTGAGCCATTCCTAATTTTTAACTGAACTTTTGGTTCTGGGTTTACTTCAGGGGGGAAACATTACCTGACAAGCGCTCCTGCTGTTTAATGTTTTAAACTGTATCTAAACGTGTTAAtctgttattttttattattattctacTATCTTATATATTTACATGTTATAGTCACTCACCTGTGGACATTATACCAATGTATGTTTACACTGTAACAGAGATGGTTCGTGACTTGAGGACAAACTCGTGTTAGCTCCCAGAACAAAcccctaggctttagctcagctgACTTCCATAGTCTTAAATCACATAGGCATCATTCTACACCTGACATTCCCTCCCTCACAATGTTGCTACAGTATAGTCGactgtgtctgtctctatgtctgtctgtatgcacTGCATGTGACTCAGTGGATATTTAAAGGCACTGTAGGTTTGTACAGTATTTACCGTATGTTGTGTCACTCTACGTGTCCATAGGGCGGTGTTCTGTGTCAACTGTCCCTAAAGGCTTGGAACATGAACCACCTGGCCTTCTTGGTCCATGAATAATAAGGTTGTGGTCATGTAAAATTGCTTTTCATTCCAGAAAGTTGTTGTTTTCCCCCCTCAGCCCACGTTCACTCGCCTTCACAGATCTGACAGGACTGACTGGATGGATGAATGCAACATGGTGGAATCTCCACCTCCTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGCCCACCTCCTATCCAATCTgactggatggatgaatgaaacaTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAAACATATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTgactggatggatgaatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGCCCACCTCCTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAAACATATCCAATCTGACTGGATGGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTCAATCTGACTGGATGGATGAAAGCAACATGGTGGAATCTCCAGCATTTATCCAATCTGAAGGCTTGTTTTCTTGGCACCTACTGtaccagggcccatattcacaaagcatctcagagtatgaCGGCTGTTCGAGGATCAGTTTTCCCTTTTAAATCATAATCATTAGGATTATATAGACAGGGAGGGGGTGCTGATCCTAGACTGAATACGGGCCCAGTCAGATGTCTTAGATCTGTGAGACGGACTAGGGGAGTGAACGAGCTAGGGCAAAGGAAGAGAAGCAACCTTTTATGATGAACTGCACACTCAGACCAGGACAGATCAAATATTTATACTAAAATATATATTCCATTACCTCTACATCAATATGCATGTAGCTGCTATTTTAGTATTCCTTTTCCTTTGGAGGATGAAGGTTAAAATCAATTCAACCTTTCCTATGGCCTTGATTTtaaatgtgtgtattgtgtgtatgaaCTACTGTCACATTTTACTTTCAGATTTATACTGAATTCTCTATTTATTCCAACTATTAATCAAATCAGAATGCAGAGGGGAATATTTGGTCATAAATATGCAAATACAAGGTCACATGGCCATAATCACCACCGAGCTGTTTCATCTCTTTTACACTGCTTGTCATAGGACTGCATGACTCACTGAGGCCTGGGGACACATGTATCAAGCGTCTCTGAGTAGGAGAGGCTGATCTATGGACAGGATGGAGCTAATCAGTACTGCTACTCTGAAATACATACTGTTCTTCACACAGTAACGTGTTCAAGTCAAAGTATATTCGTTTGCAGAGGTCTTTTCATTGTTGAAATGTTTTCACTCTCAATACCACATGTTTAGgctactataatatatagatatttttggaCCATGTAGTGTAGTTCTTCACACTCAAAGTCATCTTGCTGTCtcagatatctaaatatatttatatgTGATTGCAAAGGAACATTCTGGCCCATTGGTACATTAGTCTATTATTGTTATAAGCCATTATGGTCCCTGACACCAGCATCTAATCGTAATGTGTATGAATATTAGTCATAGTTTTAATATTGTAAATGTTTCTGTCATATATTTTTCAACCTGGTAAAGGGGATGTACTTGGGCTAAGAGAGAGCGTCTATAACCAGCACTGGTGGTTTGGAGACCTGTGGTTTTGCGATcaatggaggctggtgggaggagctatagaagGACAGGCTTATtttaatgtctggaatggaataaatggaacagagtcaaacatttGGTTTgcatatgtttgataccattacATTTATTCCATTCAAAcctttacaatgagcccatcctcctacagctcctcccaccagcctccattgTTTGAGATTATATAAATGTCAAAAAATATGTTTATGTATTGCACAGAGAGAAAtctaaaaagaaagaaaaacagcaATATTAATGATGGTAACATACAAATAAAGATATGTAGTCTGTATAAACATAATCAACCTGTGgttatgcaataaaatcttttttatatatatagaaacaaaaaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491620 lncRNA downstream 7180 35961204 ~ 35962276 (-) True G2179861
TU2491610 lncRNA downstream 13779 35953404 ~ 35955677 (-) False G2179856
TU2491667 lncRNA upstream 6778 36039403 ~ 36096507 (-) True G2179902
TU2491690 lncRNA upstream 47759 36080384 ~ 36080677 (-) False G2179924
TU2491691 lncRNA upstream 47759 36080384 ~ 36080677 (-) True G2179924
TU2491735 lncRNA upstream 123590 36156215 ~ 36158086 (-) False G2179961
TU2491736 lncRNA upstream 123590 36156215 ~ 36158086 (-) False G2179961
XM_036968144.1 mRNA downstream 19083 35911028 ~ 35950373 (-) True supt6h
XR_005040497.1 mRNA downstream 31535 35936744 ~ 35937921 (-) True LOC118945336
XR_005040496.1 mRNA downstream 32900 35935360 ~ 35936556 (-) True LOC118945335
XR_005040805.1 mRNA downstream 77072 35892318 ~ 35892384 (-) True LOC118945690
XR_005040821.1 mRNA downstream 77740 35891642 ~ 35891716 (-) True LOC118945706
XM_036968291.1 mRNA upstream 92390 36125015 ~ 36145695 (-) False nf2b
XM_036968287.1 mRNA upstream 92390 36125015 ~ 36145697 (-) False nf2b
XR_005040526.1 mRNA upstream 92390 36125015 ~ 36145697 (-) False nf2b
XM_036968289.1 mRNA upstream 92390 36125015 ~ 36145899 (-) False nf2b
XM_036968288.1 mRNA upstream 92390 36125015 ~ 36147223 (-) True nf2b
TU2491621 other downstream 6624 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1160153 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1160153 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1627643 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1822137 34121482 ~ 34147319 (-) False G2177991
TU2491931 other upstream 471848 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 473915 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 501472 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 501472 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 944529 36977154 ~ 36979761 (-) True LOC110509384

Expression Profile