RNA id: XR_005040526.1


Basic Information

Item Value
RNA id XR_005040526.1
length 4939
RNA type mRNA
GC content 0.47
exon number 18
gene id nf2b
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36125015 ~ 36147223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCGCGATTCTAACACGATACGATATTACAGAAAACAAGTTAGTTATCTCACATCTcgaaaaaaatatttgtaatgttgtaCTTCTTTGTTCACGAAATTCATGCTAATGTTGGGTTATCGCGCTAGCACGCAATTGACTCCCATTGTCTCCTTGAAGGAAAACTCAAGCTTGCCCCCCAGAGTGCACCGCGTAGCCCATTGAGGATGCAGGGGAAACGCGCGCACAGTGTGGCGTTGATAGGATTCCCATCTCCTCTAACGGATCTCTGCCAGTGGACGCGTATTCGGGAATTCATCGGTAGCTGCGTTGTAATTCACGTCCCTATATTATGAGCGTTTAGCTAGCTAGTAATTGGTATTTACCGTTCGCTTTTAAAAGCTCCttctgtgaagaaaaaaaaatatatattttgtcatTATGGATGTTTGGAGAACGTTTCGCCCGTCCCACAACCTGTTTTGGTCCGCTTTCGTGGCGTAAAACTTGTTCGTGTTATTGTAGCCAGCTCCGAAAGGTTCGGTGGCTTTCCCAGACAAATCTCAGCCTTTCCTTTTGACTCTTGGACGGCAGGAGTGGAGCAGTTTATTCCTGGGACTCGGCCTAGTCTAGTAACGTATCTCACCAATCTCCAAGGCCTCCAAAATGTCGATTTTAGGATTAAAAAAGAAACAACCAAAGACTTTTAAGGTCAAAGTCATCACTATGGATGCCGAAATGGAGTTTAGTTGTGAGGTGAAATGGAAAGGGAAGGATCTGTTTGATCTGGTGTGTCGGACAGTTGGTCTGAGGGAAACCTGGTTCTTTGGGCTCCGGTACACAGTGAAGGACACCTATGCATGGCTGAAGACAGAGAAACGGgtCTTGGATCAAGAGGTCCCTAAAGACTCACCGATAACGTTTCACTTCCTGGCCAAGTTCTTCCCAGAGAAGGTAGAAGAAGAGCTGGTGCAGGAAATCACACAACACCTCTTCTTTCTGCAGGTGAAAAAGCAAATATTAGACGAGGAAATTTTCTGTTCTCCTGAAGCCTCTGTCCTGTTGGCGTCGTACGCTGTTCAAGCCAAGTATGGGGACTATGAACCAAACTTTCACAAGCCGGGGTTCTTAGCCCAGGATGAGCTCCTACCTAAAAGAGTTCTGATGCAGTACCAGATGACTGCAGACATGTGGGAGGAGAAGATCACAGCCTGGTACGCAGAGCACAGAGGCATCGCCAGGGATGAGGCTGAGATGGACTACCTGAAGATAGCTCAGGACCTGGACATGTATGGAGTCAGCTACTTTGCCATCACTCAAAATAAACGAGACACAGACCTGCTACTGGGTGTCGATGCCCAGGGCCTTCATATTTACAGCCCCAACAGCAAACTGAACCCCAACAAGTCTTTCCCCTGGAGCGGCATCCGCAACATCTCCTACAGCGAGAAGGAGGTAACCACGTTCACAATAAAACCTCTGGACAAGAAGAAGGATGTTTTCAAATTCTACTCCTCCCAACTGAGAGTCAACAAACTGatccTGCAGCTGTGCATTGGGAACCATGACCTGTtcatgaggaggaggaaggtggaCTCCATCGAGGTTCAGCAGATGAAGTCTCAGGCCAAGGAGGAGAAGGCTCGCAAGAAGGTGGAGCGTCAGATCCTTGCACGGGAGAAGCAAATGAGGGAGGAGGCAGAGCGAGcgaaggaggagatggagagacggcTGTTCCAGCTGCAGGACGAGGCACGGCTGGCCAATGAGGCGCTGCTGCGTTCAGAGGAGACCGCAGATCTGCTGGCGGAGAAGGCCCAGATCGCCGAGGAGGAAGCCAAGCTGTTGGCCCACAAGGCTGCCGAGGCggagcaggagagacagaggatagaggCTACCGCCCTCAAGAccaaggaggagaagagactgatGGAGCAGAAgatgagagaggcagagcagcTGGCCGTCAAACTGGTGGAGCAATCAGAGAGGAGGTCGAAGGAGGCGGACCATCTGAAGCAGGACCTAACAGAGGCCAAGGATGCTGAGAGGAGAGCCAAGCAGAAACTCCTGGAGATCACCAAGACATCTTATCCGctCATAGCGGCCtactccaccccccctcctcccccagagGGAGGAGACCTAGCTCTGGGATCCGGATCAATGCGCATCGACTTTAAAGACTCTGATATGAAGAGACTGTCaatggagatagagagggagagGCTAGAGTACGTGGAGAAGAGTAAACACCTGCAGGACCAGCTGAAGGAGCTGAAGTCTGAGATTGAGTCTCTGAAGttggaggagcagcagcagcaggctggGGTCTACAGCCTCCGCAACGAGGCCCGCGGCTACCCCCCTGAACCACCCTACATGCCCCATAGTAATAGAAACTCTGCCTACATGGCTCAGATGGCTTTTTTTGAGGAAGTGTGATCCAACTGCCATTGGATGAAACAGGGGGTAGGCTAAATGCCATTGGAAGACACGCAGGGAGGCGGGACATTGGTTGTGACTCTTGTTCCTTAATACCAAGATATGCCTACTTCATCTATCTATGTTTTGTGCCTGACAAAAGgagcacactgacacacacacacacactcccagtgaCACTCCAGAAAGGACTGTGCTTTGGAAAGATTTGTATTCCTCAGAtgacacacaccacaacactacaagtTCTCCGTTCTGTTTTATTTGATGCTGCCCTAGCCACACTGCCTGTGGGCGTATATTATCACAGACGGTGCTGTGTGCATGTTCTGTGGAGGTATTTTACTTCAACGTTTGGTTTTTAAAGGGATGCCTGGTAGAGTGTGATAGAGATTTGACTGAGGTAGTTTATCCTATATGACTGACTCTACACTACAGTGTGCCTTTAGGAGAATATACTCTCGCAGCGACCAGGATCATGTCTGTCTAGCTACCAGGCTTCAGGTGTGATACCTTGCCTTCGCTGAGCAATGTCTTACTTTACTCAGTCGTTTTGTTGTAGCATGGTCGAACTGATCGTCTCCAGAGCAACATGTGTCCTGCATCACATTATGCCTCCTAACCATTGTCAATTCAAACTGTCATTTCAACGGTTTTATGTTTTTAGTATTTTAGACTGTTGACGTGCCTTTAAAACATTTTCTTCACGTTACGAACATTAAATATGCAATCCCTCGTTCACTAGTTCCTGTTATGGagcatcccaaaaggcaccctactccctatttagtgcactgccTTCGACCAGTGCCCTATTTAATTCATTtatggtgacatttgggacaatAACCTGCCTGGATTGTCAAACACCTCTGGGGTGGGTTTAGCAGGCAGACAAGCCCACTTCTCTTCTGATTTCTACGACATCTTGTTAGTGCTTAGCTCAGAGGAAGGTTCCATCTAGAAAAGTAGGGAAGACATTCTGtatatggaggaggagaagagggagagagaaggtggtTTGTGCTTGTTAAGGAAGTAGATTTTAGATGTAATAACtcatggttaagggttggggtcaattccatttcacaGAAATGATCTGAAAATAACAGactataataatattataatgcCTATATGCTGAGTTGAAATGGTCTGGACCCAACCTTTGCTGTGTTTTTTGAATGGGAACCATGTCTTAAATGGTCAGATATCCTAACTAACAGAACACTGCTTGGCAGATTATGCAACATTTTCAAGGTCGGGGGTTGGTTTGGCATTTTTGTGGGTGCAGACACCTGCACGTACAGAGACACACAGCCATGTATTCAAACCATGTGTCAATATCACATTTAAACCCTACATTTTATTAGTCATTTTTATTGTAACATAAATAAATTATTGTCAGATCTGTTGTCAGAAGTTTCCTCTAACCGATGTCAGGTTTGAATCGAAATGGAGTTGTTTTTAGATGGCAGGATATCACACACGCACTCAGCATAACTGTTGTGTACATGTGTTTTTCATTTCTGATGGTTATACCTATGTATGTGTGTAGAATAGTGTTGTTGGGTTTTATAATGTTAACTCCTTTTGTTGTTTATCTTACTGTTGTTGACTTAACCATTCCTGCTTTTTccatcctccccccccccctatcctcctttccctctctcgcaCTCCTCCTTTTTCATGTGTTCATCGGCTTTAAAGGGCTTTACGTGTCACGTCAGTTTGTTTCTAACTGTTTGTTTTAGTAGATGACCTCAGAACTGTTTCATATCTATAGGTTTACTGTAATCACCCATAtctgtcccaagtggcaccctactccctatatagtgcactacgtttgacccgGGCCAGCATCAGgctcgggtcaaaagtagtgctctatacaagggggaatagagtgccatttgggacacagacactaTATGGCTGTCTCGCAACACTCTGTCGTTGCCTCCTTTCCTTTTTAGAGTGCGGCAAGTAACCTTGCGGTTAGTTAGGCCAGTAAACGGCCGAAGAGGTCGCTGTTTCGAgtacctgagccgacaaggtgatacatttgtcgatgtgcccttgagctccaggggcgccgtactactatggctgaccttgTAAAACACTACACTGGACTATGTTTTTCTTCTTCACAACCTTGATTCCGTTCCTTCATTGCCGCTAGTCAATTTATAGAGGTGTAGAGGTTTCCTCCGTGTAGAGGTTTCCTCCGTGTAGAGGTTTCCTCCGTGTAGAGGTTTCCTCCGTGTTGCTGTCACCTATCATGCCCTGCCAGATCAGTGGCCATAGAGGAAAGGACACAAGGGAAGGAAGCTAGTTAACACTATTAAGACACAGCCAGGACATGCCAAACAAAAGCGAGTCACAATGTCTGATTTCCGAGATGAAGTGTTTTGagtgctgtgtttttttttttttgtcataagAGAATCAATGCTGTCAAAGGGCTTGGCTGTTGCTTATTAAAACAAATATACATTagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491667 lncRNA downstream 28508 36039403 ~ 36096507 (-) True G2179902
TU2491690 lncRNA downstream 44338 36080384 ~ 36080677 (-) False G2179924
TU2491691 lncRNA downstream 44338 36080384 ~ 36080677 (-) True G2179924
TU2491620 lncRNA downstream 162739 35961204 ~ 35962276 (-) True G2179861
TU2491611 lncRNA downstream 169338 35953404 ~ 35955677 (-) False G2179856
TU2491735 lncRNA upstream 10518 36156215 ~ 36158086 (-) False G2179961
TU2491736 lncRNA upstream 10518 36156215 ~ 36158086 (-) False G2179961
TU2491737 lncRNA upstream 10518 36156215 ~ 36158086 (-) True G2179961
TU2491823 lncRNA upstream 150813 36296510 ~ 36296984 (-) True G2180042
TU2491843 lncRNA upstream 184815 36330512 ~ 36330737 (-) True G2180062
XM_036968056.1 mRNA downstream 92390 35969456 ~ 36032625 (-) True LOC110509452
XM_036968055.1 mRNA downstream 94628 35969456 ~ 36030387 (-) False LOC110509452
XM_036968144.1 mRNA downstream 174642 35911028 ~ 35950373 (-) True supt6h
XM_021591610.2 mRNA upstream 17452 36163149 ~ 36165830 (-) True LOC110510222
XM_021591613.2 mRNA upstream 46406 36192103 ~ 36194036 (-) True LOC110510224
XM_021591603.2 mRNA upstream 49712 36195409 ~ 36196374 (-) True LOC110510219
XM_021591602.2 mRNA upstream 55071 36200768 ~ 36221187 (-) True LOC110510218
XM_021591601.2 mRNA upstream 64387 36210084 ~ 36211474 (-) True LOC110510217
TU2491621 other downstream 162183 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1315712 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1315712 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1783202 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 1977696 34121482 ~ 34147319 (-) False G2177991
TU2491931 other upstream 358776 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 360843 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 388400 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 388400 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 831457 36977154 ~ 36979761 (-) True LOC110509384

Expression Profile