RNA id: XM_021591610.2


Basic Information

Item Value
RNA id XM_021591610.2
length 2682
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC110510222
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36163149 ~ 36165830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGACAATACTGACGCCACCATTCACAGAGAGAGTgtttgagaggagggagggaggaagagaggacagaaagactgatagaggaggagggagaaaaagagaaaaaatagagaggtagagagagagagaggtaaagagagtcAGGTGTAGCAGAACAGGTATAGAGACACAGATACACCCAGAGGTAGGCAGGTAGGAACTGTACGCAGGAACATAGGCCTGTAACAGGTGGGCAAGGCAGCAATCTGGGATCTCTGTCATCTCTGGTGACCCACTATACATAAAAGAAGCTTAgcggagggagagaagaggctgAAACTGAAGAAGGGTCAGCTGAAAAAAAGACACTGCCAACCATAAAGGACTGAAAGACTGGAGGAAACGGGAAGTGACTAAAGAGTGTTTCAGTTCAGGACTCACAGACCCTGAACAATCCAAAGGGATTGCCAATAGAGTAGATAGGGACTGTGAGAGACAGAGGCGTGCGAACGTCAGACTTTCTAAGGACTCTGACTGACAACAACCAGCAAGCAGCTAGAGAGACCGTGTGTTCTCTCCTCTGCCCCCTCTAACATGGTCTCTCTGGGGATCCAGATGCTGGGCAGCGCCCTGAGCCTGCTGGGCTGGGTGGGGGTCATCCTGACCTGCATCCTGCCCATGTGGAGGGTCACGGCCTTCATTGGAGCCACCATCATCACGTCTCAGACCATCTGGGAGGGTATCTGGATGAGCTGCGTGGTCGAGAGTACGGGCCAGATGCAGTGTAAACCATACGACTCCCTCCTGGCCCTGTCCTCCGACCTCCAAGCCGCCAGAGCGCTCACCGTCCTCGCCATCGCCACGGGCACCGCCGGGCTCCTACTGGCCTTCGTCGGGGGGAAGTGCACTCGGTTTCTGGATGAGCAAAGGGGCGGGGTCAAAGAACGGGTTGCCGTGACAGCGGGCGCGGTGTTGATCGCCACGGGGGTGCTGTGCCTGATCCCCACTTCGTGGGCTGCTGGGGCGGTGGTGCAGGGGTTCTACAGCTCCACCACCGATGCCCAGCGGAGGGAGATCGGGGCGTGTCTATACATCGGCTGGGGGGCATCCATCCTTCTCATCCTGGGAGGGGGGCTGTTCATCAGCTCCTCCTGCCCCCTCACGGCCCACGATGAGGATAAGAGCCCCTCTGTTCGCTACCTGGTGGTTCGCTCTTCCAACGGAGCCACCTCCAGCCAGGCAGCAGCCTCCCAGCACAGCAGGGGACCGTCCACAAAGTCCCAGGCCAACGGCAAAATGGCCTTTACCAGGTCTCACAGCAGCCAGGCAGCATCTGCCAAGTCTCAGCCCTGGGGAGTGGTGAAAACCAGGCCTCCCTGGGAGGAGTACGGGCTAGGTATGGTAGAGCAGGACTACATGCCGGGGTCTGGGGGGAGTAAGGCACCGTCTACAAAGTCTCAGTTGAAAAGACTGGAGTCTCAGGAGAGTTTAGCAGACAAGTCTTCACCCAGTGAGGATGAATCCTTAAACCCAACTAAGACCTATCtctgagaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagcatggtTTATGGAAAATATGGATATTAAATATGCCTTGTTTACTTgtttatttgttttgtgtgtgaaaAGTGATATTAGACATTTGAATATTTGCTGAAGGATATAACTGGCACTGAAAGTTAGGTTTTCTTTTTATTAGTTGGGTTTGTTTATGACATGTAAAAGCTGTTCCATGTTTTGTTGCTGTAATAATGTATGTAAAGAAAAGTCTACTTCCCTTGATGTGAATATGTTTTCAGTCCCTTTAACAATGACCAGACATATACAGTAAGACTATTGATTAGTGTTTATATGAAGCTTCTTGGTTCTGCAGTTTGTTTTCGTAGCATCATTTTGACACATTTAAAAATACCATTTCCTTTTCATGTAGCTCTTTTACGTGACAAAACTCAGAATTAGTTCAATATGAATTAGTATGTGACCAGCTACACTATGGAAAGCCCCAGCCGGGACAAACCAGTTTGACAGAGAGTGAGTTGAGGCTGAGCTCACACCAATGGTTTGCATTGTGTTAGGGAGCGATAAAATGGGGTGttccgaatggcaccctattgcctatacagtgcactacttttgaccagggctcatagggaataggttgcaatTTGGGATACACACCGTGATGTTCGTGAAGGATTCAAATGTGAGTTTCACCAGATCACGGACATGTGACGTCTGGGTTTTGTTTATTAAAATGCAGATGTTTTCCTGTTTACCCAGAACAAGTATATCTCTACCATGAGGTGAGGATCAAATGTACTGTCAGCCTACATGCTTCTAGCCTACTAAACCCAATGTAACAAACACAAGCTCTGTTTTGCCAAATTAGGATGACAATGCAGGTTTGAGCTCCCTCTGGTGTCTGGATGGGTTTGTACATGAACACAGTAAACACAGTAACTCTCATTGACTAAAGGGTATATATTAATGAGCAGGAGAAAACCCTCAGGCCCCAAGGACTGAATGTACAATATGAATAAATGTTTGGAACCA

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491735 lncRNA downstream 5063 36156215 ~ 36158086 (-) False G2179961
TU2491736 lncRNA downstream 5063 36156215 ~ 36158086 (-) False G2179961
TU2491737 lncRNA downstream 5063 36156215 ~ 36158086 (-) True G2179961
TU2491667 lncRNA downstream 66642 36039403 ~ 36096507 (-) True G2179902
TU2491690 lncRNA downstream 82472 36080384 ~ 36080677 (-) False G2179924
TU2491823 lncRNA upstream 130680 36296510 ~ 36296984 (-) True G2180042
TU2491843 lncRNA upstream 164682 36330512 ~ 36330737 (-) True G2180062
TU2491854 lncRNA upstream 192330 36358160 ~ 36359289 (-) True G2180066
TU2491855 lncRNA upstream 193570 36359400 ~ 36377438 (-) True G2180067
TU2491875 lncRNA upstream 229640 36395470 ~ 36395789 (-) True G2180086
XM_036968288.1 mRNA downstream 15926 36125015 ~ 36147223 (-) True nf2b
XM_036968289.1 mRNA downstream 17250 36125015 ~ 36145899 (-) False nf2b
XM_036968287.1 mRNA downstream 17452 36125015 ~ 36145697 (-) False nf2b
XR_005040526.1 mRNA downstream 17452 36125015 ~ 36145697 (-) False nf2b
XM_036968291.1 mRNA downstream 17454 36125015 ~ 36145695 (-) False nf2b
XM_021591613.2 mRNA upstream 26273 36192103 ~ 36194036 (-) True LOC110510224
XM_021591603.2 mRNA upstream 29579 36195409 ~ 36196374 (-) True LOC110510219
XM_021591602.2 mRNA upstream 34938 36200768 ~ 36221187 (-) True LOC110510218
XM_021591601.2 mRNA upstream 44254 36210084 ~ 36211474 (-) True LOC110510217
XM_021591597.2 mRNA upstream 219438 36385268 ~ 36394770 (-) True bicdl2l
TU2491621 other downstream 200317 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1353846 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1353846 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1821336 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 2015830 34121482 ~ 34147319 (-) False G2177991
TU2491931 other upstream 338643 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 340710 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 368267 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 368267 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 811324 36977154 ~ 36979761 (-) True LOC110509384

Expression Profile