RNA id: XM_021591613.2


Basic Information

Item Value
RNA id XM_021591613.2
length 1934
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110510224
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36192103 ~ 36194036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGTCCACCCTCACACATTCCCATACTGGGGAATCAGGAAAAGCCGGTAACCTGAGCCACAAACTAGCTCAATCCCCTCCCTGTTCTATTTCCTTTCACAATACCTCCAGTGTTACTGACACAAGGAAATGTGCTCTCATTCGACAAACACAGCAACCCTCTCACGGCTGCCTTGGCTTAGATGCAACTTGTGGACTTGTAATCATTGTTAGTTTCAAAGAGGACAAAGGGGATACAAtggtctgctctgctctcacAGCTGCCTTGGATTAGCTGCAACGTTTGGATTCATGGACTTTTATAGATAGACTGGAGAATTTGACTTGTCCGCATCTGAACTATCAGGCCTTTTTCCAAGACCAGTCTCATTTTGTAGAGTAGGAAATACAAACTATGCAAAGTCAACCCCACATCGGATCCAACAAGCTAACGACAACGTGGCCATTACAATACTTCCAGAACCCCCTATTGGACACTTTCAACTATTCCGGGGAAGAACGATGAGCCGACAGATCCTTGCCTTTGTCCTGGCCTTCATCGGGTTCATGGGGACCATCGTGATCTGTGCCCTGCCCATGTGGAAGGTAACAGCCTTTGTCGGAGCCAACATTGTCACTGCCCAGGTGTTCTGGGAAGGGTTATGGATGAACTGTGTGATCCAGAGCACGGGTCACATGCAGTGTAAAGCCTACGACTCCCTCCTGGCCTTGCCCCAGAACCTGCAGGCTTCCAGGGCTCTCATCTGCGTCTCCATTGGGGTCAGTGTGCTCGCCATCGGGCTGACTGTAGTTGGGGCACGCTGCACCAACTTCCTCCATGACGACTGGCTGGCCAAGTCGAAGGTTGGCATCGCGGCAGGCGCGGTGTTCATGGCAGCGGGGGTGTTGTGTGTTATCCCCGTAAGCTGGTCCGCTCACACCATCATCCAGGGCTTCTACAACCCTCTGGCcacccaggagaggagaggggagctgGGGGCGTCCATCTACGTGGGGTGGGTGTCTGGAGCTCTGCTCATGATCGGAGGGGGGATGCTCTGCAGCACGTACAGGTGctaaggagggagaggaggacattaGTTATGGATGccaaaagagagaagagaggatatcAAATGCTGGCCTTGTCCTGGATGGATGAGGGGAGGAATGGATAaggggaagaagggaggagagagagggctttaaacattgtatgtttgaggaagagagaggataaCACATTCTCTCCTCACTCCCTTAAAGACATGCCTAAGTCTGGGATGATTTAGTCCATATTGCTCCCACCTAGATTATTTTCTTGTGTGGAGATGTATTAGGTGAGGCCTGTAGATTACCTGTGTAGTAACTGTATGGTGAAATTCACAGGAGGGGTGCAGTGACTGCATCCTAAATGGGACCCTATacccaacatagtgcactacttttgaactgcAAAATCGTGCAGGGTAAGGTGAGACGGTACccctgagatacagtatatgactgtacagtatatgtgacGGAGATCAGACTAGGTCAGGTTAGATCAGAATAGGTCAAGTTAGATCAGACTAGGTCAGGATAGATCAGAATCAGGGTAGATCAGACTAGTGCAGACTCATGTTAGATAAGACTCAGTTAGATTAGACTCATCTTAGGTTAGATCAGACTCAGGTTAGATCAGACTAGGTCAGGTTACATCAGAATCAGGTTAGATCCGACTAGGTCAGACTCAGGTTAGATCAGACTCAGGTTAGATCAGACTAGGTCAGGGTAGATCAGGCTAGGTCAGGTTAGAACAGGCTAGGTCAGGTTAGATCAGAAGTAATAAAATGCACTTTGTCTTTGATCAAAACCTAAATCAGATATAGATTATGTTAAGGAAACGAATAATGATTGTAATGATGAGTCGTGATGAACAACATTATCAATAAACTGCTTTCCTACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491735 lncRNA downstream 34017 36156215 ~ 36158086 (-) False G2179961
TU2491736 lncRNA downstream 34017 36156215 ~ 36158086 (-) False G2179961
TU2491737 lncRNA downstream 34017 36156215 ~ 36158086 (-) True G2179961
TU2491690 lncRNA downstream 111426 36080384 ~ 36080677 (-) False G2179924
TU2491823 lncRNA upstream 102474 36296510 ~ 36296984 (-) True G2180042
TU2491843 lncRNA upstream 136476 36330512 ~ 36330737 (-) True G2180062
TU2491854 lncRNA upstream 164124 36358160 ~ 36359289 (-) True G2180066
TU2491855 lncRNA upstream 165364 36359400 ~ 36377438 (-) True G2180067
TU2491875 lncRNA upstream 201434 36395470 ~ 36395789 (-) True G2180086
XM_021591610.2 mRNA downstream 26273 36163149 ~ 36165830 (-) True LOC110510222
XM_036968288.1 mRNA downstream 44880 36125015 ~ 36147223 (-) True nf2b
XM_036968289.1 mRNA downstream 46204 36125015 ~ 36145899 (-) False nf2b
XM_036968287.1 mRNA downstream 46406 36125015 ~ 36145697 (-) False nf2b
XR_005040526.1 mRNA downstream 46406 36125015 ~ 36145697 (-) False nf2b
XM_021591603.2 mRNA upstream 1373 36195409 ~ 36196374 (-) True LOC110510219
XM_021591602.2 mRNA upstream 6732 36200768 ~ 36221187 (-) True LOC110510218
XM_021591601.2 mRNA upstream 16048 36210084 ~ 36211474 (-) True LOC110510217
XM_021591597.2 mRNA upstream 191232 36385268 ~ 36394770 (-) True bicdl2l
XM_036968195.1 mRNA upstream 230374 36424410 ~ 36447869 (-) True sumf2
TU2491621 other downstream 229271 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1382800 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1382800 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1850290 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 2044784 34121482 ~ 34147319 (-) False G2177991
TU2491931 other upstream 310437 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 312504 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 340061 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 340061 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 783118 36977154 ~ 36979761 (-) True LOC110509384

Expression Profile