RNA id: XM_021591603.2


Basic Information

Item Value
RNA id XM_021591603.2
length 966
RNA type mRNA
GC content 0.53
exon number 1
gene id LOC110510219
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36195409 ~ 36196374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCCAACAAACAGGTGCTTTCAATTGTCACAATTAGTAACCATACCCTGGTAGGTGGGTATAAAGGTTGGAGTCTGTATCCTAACCAAAATAGCTAGCATTCCCACTGCTAAACACTAGTCCTGCCTGTTTTACGTGTGTTTGAGTAGATAGAACGCAATGGCCTCCGCTGGTCTCCAGATTCTGGGCATTGCCCTGGCTATCATCGGTTGGATCGGTGACATCATAATCTGCGCGCTCCCCATGTGGAAGGTGACTGCTTTCATCGGCAATAACATCGTAACCGCGCAGATCTTCTGGGAGGGCCTGTGGATGAACTGTGTGCTCCAGAGCACGGGCCAGATGCAGTGTAAGGTCTACGACTCCATGCTGGCATTACCTCAGGACCTCCAGGCCGCCAGGGCTCTGGTCGTCATCTCCATCCTCGTGGCCGTGATCGGCATCCTGCTCTCCATTGCTGGGGGGAAGTGCACAAACTGCATCAACGACGAGGCGGCCAAGTCCAAGGTGGCCACCGCATCCGGTGTGTTCTTCCAGGTCGCCGGCATCCTCTGTCTGATCCCGGTGTCTTGGTCCGCCAACACCGTCATCAGGGACTTCTACAACCCGCTTCTCACTGACTCGCAGAGGAGAGAGCTGGGCGCGTCGCTGTTCATCGGATGGGGCTCTGCTGGCCTGATGCTCATCGGGGGCGcacttctctgctgccagtgccCCCAGCGCAAGGAGGGTGGGTACTCTGCCAAATATTCCGCCCCGCGCTCTGCCGCCAGTGGCGCGGCCTACGTCTGACAAGACGGAACCCTGAAGTTGTCTTAAATGGAGACTGATGTAGTAGAAATTATGCATGAATGTGAATCTCTTCGCTTAACTGCAGTGCAACATGGAAATTCAAGTGGGGATTAGAATTGTTTTTTTCATGACATGTTTTAACGATTTATTGCTTTAATAAATGATTGTTCTTTA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491735 lncRNA downstream 37323 36156215 ~ 36158086 (-) False G2179961
TU2491736 lncRNA downstream 37323 36156215 ~ 36158086 (-) False G2179961
TU2491737 lncRNA downstream 37323 36156215 ~ 36158086 (-) True G2179961
TU2491690 lncRNA downstream 114732 36080384 ~ 36080677 (-) False G2179924
TU2491823 lncRNA upstream 100136 36296510 ~ 36296984 (-) True G2180042
TU2491843 lncRNA upstream 134138 36330512 ~ 36330737 (-) True G2180062
TU2491854 lncRNA upstream 161786 36358160 ~ 36359289 (-) True G2180066
TU2491855 lncRNA upstream 163026 36359400 ~ 36377438 (-) True G2180067
TU2491875 lncRNA upstream 199096 36395470 ~ 36395789 (-) True G2180086
XM_021591613.2 mRNA downstream 1373 36192103 ~ 36194036 (-) True LOC110510224
XM_021591610.2 mRNA downstream 29579 36163149 ~ 36165830 (-) True LOC110510222
XM_036968288.1 mRNA downstream 48186 36125015 ~ 36147223 (-) True nf2b
XM_036968289.1 mRNA downstream 49510 36125015 ~ 36145899 (-) False nf2b
XM_036968287.1 mRNA downstream 49712 36125015 ~ 36145697 (-) False nf2b
XM_021591602.2 mRNA upstream 4394 36200768 ~ 36221187 (-) True LOC110510218
XM_021591601.2 mRNA upstream 13710 36210084 ~ 36211474 (-) True LOC110510217
XM_021591597.2 mRNA upstream 188894 36385268 ~ 36394770 (-) True bicdl2l
XM_036968195.1 mRNA upstream 228036 36424410 ~ 36447869 (-) True sumf2
XM_021591593.2 mRNA upstream 257554 36453928 ~ 36463448 (-) False LOC110510211
TU2491621 other downstream 232577 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1386106 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1386106 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 1853596 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 2048090 34121482 ~ 34147319 (-) False G2177991
TU2491931 other upstream 308099 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 310166 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 337723 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 337723 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 780780 36977154 ~ 36979761 (-) True LOC110509384

Expression Profile