RNA id: XM_021591597.2


Basic Information

Item Value
RNA id XM_021591597.2
length 4690
RNA type mRNA
GC content 0.44
exon number 6
gene id bicdl2l
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36385268 ~ 36394770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAAAACGAGTTGGTAGACATTCTCTGTGTTTTGTTCCctccccttctcgctctctctttttctctcactgtcATAGACTCTTCTCACTGCCAGTCATTGTTTTTGTCCCAGTGAGATTGTGAGCTCCTCTCTTCAATTCTTTCTCTCGAACTCTCCTGTTGTCGGTTTGGTGTTTGTGACCCCTCTATTATGCCATGGGAGACCCTGTGCCTTTCTCCATCCTGAACGAGAGACTGAGACCACAGTTGACTGCCATGGAACAACTCTGCTACTCCCTGCACACCCTGGAAGATGGACACCAGCTGGCTGGCATTGTCAGTGGCAGTTCAACCACAAGGTCTACAATACTGAGAGATGAAATACAAACACAGGATGATTCAAGCTCGACCACGACCGAACCAGAGGATGACCCAGAGAAGGAGGATGTGGTCACAGAAAGGTTGACTTCGCTGACCGAAGAGGGGGACAACTGTCATGATCTGTTGACCATGACCAATACCTGCTTGATGCAATCTTTGACCGCAGAAGATGCTGGTCCTGATGGTTCTGGTGAGCTGACCGTGGTCAAGGAGAGTTTGGCCATAGAGAGTGGCGATCCAGGTGTTTTGACCATGGTCAGTGAGGGAGATGGTTCTGATGAGGTCAGTGAGGATAAAAGCCCTTTCAGACGGAGCTACGTAGACCGAACCTTACCGGACCTCATCAGGAGTGGACAACAGCTCGGCAGACGCAGAACATTAGGACCAGTGTCCGACACGTTGAAGGAAGTGCGTCGGGAGGTGGCGCTGTCAGTGAGACGCAGTCTGAGGCTGAAGGCTCAGGTGGACAAACTACAGGAGGACAGAGACGAACCGGGATGGATCCAACACAGGgagaaggtTACAGAGGAGGTTCAGTCCGTTCTGAGGTTGTTGCTTCCTCTGACAGAAGCAGAGTCCAGCACAGTAGAACCATCTGTTCAGGAGAACAGTCTGGATACAGCGCTGGTCCTGCTGCAGAACGTCGCACGCAAACTAGCTCTCAGCCACACAGCACAGGATTCCCAGTTCTGGGTTAAAAAAGGGAATGGTATGGATGACAGTGCTGTTCTACAACAGGCACTACGGGACAGAGACGATGCCATGGACAAGAAGAAGGCCATGGAGGCGGAGCTTCTCCGCAGTAAGACAGAGATGATGTTACTGAACAACCAGCTGTTGGAGGCTGTGCAGAAACGACTGGAGCTCTCACTGGAACTAGAGGCCTGGAAGGACGACATCCAGAGGATCCTGCAGCAGCAACTCCAGAGCCAGCAGGCAGCAGAACAAGCCCAGAGGAAACCCTCCCGTCTGGGGCTGCTGAGGAGAACTAAAGAACCCCCACACCAGAAGCCAGCCTCCACCCCTGCCCCCTCGCCGGCCCTACAACGCACCCCTGTTACCTGGAGGGACAGGCTGAAGAGGGGGAAGACGGGTCGTCATGGTGACCAGGATGCAGCGCAGGCGTCACCGGTGTCGCGGTCGTCAAGTAGCAGCAGCAGACTCGAGGGGTTTCATACCATAGACTTATAATACAACATGAGAGGGACAAATCATTGCTACTTTATACATTTTTCAAACTGTTGGTTCCTACTGGGAGAGATACATGGATTACACACATTCACAATGAGAATAATTCTCTACTTGAGGAAAACATTCATAGTACATTTGGGTTGTAGAGTCTCTCCAACTGTAATCATTAATTTAACTATAACGCGTGTCTTTGATTAAAGCAATTGAAACGTCCTTCCAAATGCTGAGCGTGCTACTTATTCTAGTCGAGGAGACAAGTACACAGCTAAAAATGAGGGATAAAACAGCCACAATGTCCCAAGGATATCACAACTTCCCATTCTCCTTAACCCATAATATTTACCAAGTGCAGACTAACTGGTATGAGACAAGacatttgtttttatttcctTCAATTTTAATATACATCAGTAATACATCATTAAATATTTCTCAATTATTCACCCAATGTATCTCACAACTACATAACATTTCTTGACATTGAATGAACATTACTGTGGCAAAGTTAAAATGCATAGGCCTATCGACAACTGAACGAGAGGATGAAAAGGCATGCTCATAGTAAAATAGACTAAATTACGGTTTGTCAATTTCAACATGAACataaataaattaaacatttCACCTCATACCTGGGTTAAAATTGGTTCAATTAGTATTGGTTtttatttcaaatactttaggtGTGCGCTTGATTGAGCTTGTACAGTGttaatggaatagtcccaaaagtgcaaaccccatCAACCCAGGTTCAATATCTGTAAATCTTTCCCCTAGACACATTCTTGACCAACAGAAAGCCAATATGAACCATGGGGTCTGAGTATGATTGGTACGGGATTGCCTAGCTACTCAATTACAATCTATTTTAGTTAAAACATGGTTAAGCTAGTTCAACACGAACCATTCTGATATCTTTAGTTATTCAAACCTGGCATCCAATGGAGTACACTTTTTGTTTAACTTTCAACTGATCAAAATACTTTCAACTACAAAAATTATAAACACACTAGGACCCTTTTGGGGCTATGAGTTACTGTGATAAAATATAACTGGCAACACGGAGACCAGTCTCAGAGCTGCTGGATAACTGCGGAAACTTGTTACACATTTTACAGAGATGAAAAAGGagatgaaaacaaacaaaaaaaagcctcagaggcacaaacacacagacagactgagcTGCAGTATCACTGATTGTACTTTTCCCCAGACACACAAGCACCAAAACATTTCACTGAAGAACAAACCCGACCACAGTAGAGGAAATCTGATAAGATTAAGGACAATATGAGTTAGATTTTTGCAGCATATCTGACATACCCATGAACACTAAAACATggcagaccaattctgatcttttgcccaattatttgCGAAACATCTGATTGGTCAAACGacatatcagaattgggctgcctgtgtaaatgcagcctttgTCTACAGAGTCAAAGTGATTCATATACTTGAATAAATGACCATTGAAACAGACGCTAGTAGATTATCACAAACAGAGTACACAGTTAATTTTTTACAAAATGGCCACTCACAACACAGAAGAGTAGAGAATATTACCCAGAGTGTAGTGTAGAGCATTGGGTTTTCCAACTCCAGTCCGAGAGAGTGAAGGCTTTTGTTCTAACCCTGCACTAAACACACCAGTTTCAAGTAATCAACTATTCATGGTCTTCTGTCTGGAACTTGATTAGTTGAATAAGGGTGTTAGTGTGGGGAGTCAGGACCCACCGTCCTAGGGATCTCCAGAGTGTGTTAGTGTAGGGCTGGAACAAAACCCTGCAGGTCCAGTAGATTCCCCAGGACCAGAGTAGGACCCCCTCTGCTGTAGAGTCTAACCTGGGAGATACAGGAGATAATACAGTACCTGGAAAGATATAGCTTTATTAGCGCTTAAAATGGCATAGAAAGATAGCTATTTAGCCATCTGAATGACATCACACTATAAAAAAGGTCAAACGTGTTACACTACATGTAATCTAGTAGTACGACAAAAAAAATACTGAAATTAATTCCAAAGACTAAGGGTCAGATTTACTAAAGCGTTTGCATCAATTGAAACACCTTTTTCCCCCAGCTGAGGGTAAGATaccaacaaacaaaaacacagctTTAACACTAGGCTACACTGTGTGCTTTCACTTAATGTTTTATTCCATTCGGTAACAATCATTTTACCACTTTGTTCTCCTTTCTGGCTAATTCCCACAGGCTTAGTAACATACCGCACACAAAACACACCATGTATAAAAGCGATTGCACACAGCAACACAACAGCCCCGATCTCTCTGGGGAGCCGTAGATGTTCCTTCACTGACATCAGGTGCTAAATCCACGTCAGTTCAGACAGAACCAGAGCACTTATTCATGAGTGctcatctaggatcaggttcACCCTTTGTTCATACGTTATTCACTATGATCTAAAAaggaaaaactgatcctagatcagcaccctAATCTATGGTTCAGTGCTGCAGTTGTACTTTACATTCCCTCTGCTTGAGAGGTCCTGTCTTTAGTCCAGACTTCTAATATAAAATAATTAgggcccgtattcataaagcatTGTAGGATTAGGAGTGCTGATGTAggatatgtatatacacacatacatacactcccccccccccccaggggttGCCTGGCTACCCAAGCACCTTGCTCCAGCCAAACGTTACACCACACCCACGGGTGTAAATTGCTTCATCGCAATGAGTCTAAATTTAAAATTCTAGAACAGAAAAAACATTCTaaccgttctgattggtcccagaaacagATGGGTTGGGCCAAAGCCAGAACACACACGGTTAAAGCAGAGGTTTGATTAGTTAGAGATAAGCCAATCGCTGATTACAACACCCGTCTTTGACATCACCGCAAACGACttcaatagctaggtttccatccaattggcgacagattttcacatgaatatttaaaaaatctgcagAGATGAGTTTCCATCAAATGGACTtgtggataaaaggctgtgcgtgatgacgtagtccACATAAAAATACCTTTTGCGGATTCACATGTACCCAATAAaaaagttaaatgggtttctatggcacTTTCAACTCCAggcctactgatggttttgtcacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491855 lncRNA downstream 7830 36359400 ~ 36377438 (-) True G2180067
TU2491854 lncRNA downstream 25979 36358160 ~ 36359289 (-) True G2180066
TU2491843 lncRNA downstream 54531 36330512 ~ 36330737 (-) True G2180062
TU2491823 lncRNA downstream 88284 36296510 ~ 36296984 (-) True G2180042
TU2491735 lncRNA downstream 227182 36156215 ~ 36158086 (-) False G2179961
TU2491875 lncRNA upstream 700 36395470 ~ 36395789 (-) True G2180086
TU2491886 lncRNA upstream 7403 36402173 ~ 36404046 (-) True G2180094
TU2491887 lncRNA upstream 28136 36422906 ~ 36423112 (-) True G2180095
TU2491894 lncRNA upstream 55246 36450016 ~ 36450306 (-) True G2180102
TU2491895 lncRNA upstream 56346 36451116 ~ 36451326 (-) True G2180103
XM_021591602.2 mRNA downstream 164081 36200768 ~ 36221187 (-) True LOC110510218
XM_021591601.2 mRNA downstream 173794 36210084 ~ 36211474 (-) True LOC110510217
XM_021591603.2 mRNA downstream 188894 36195409 ~ 36196374 (-) True LOC110510219
XM_021591613.2 mRNA downstream 191232 36192103 ~ 36194036 (-) True LOC110510224
XM_021591610.2 mRNA downstream 219438 36163149 ~ 36165830 (-) True LOC110510222
XM_036968195.1 mRNA upstream 29640 36424410 ~ 36447869 (-) True sumf2
XM_021591593.2 mRNA upstream 59158 36453928 ~ 36463448 (-) False LOC110510211
XM_021591594.2 mRNA upstream 59158 36453928 ~ 36463448 (-) True LOC110510211
XM_036968204.1 mRNA upstream 78022 36472792 ~ 36488911 (-) False LOC110510210
XM_036968201.1 mRNA upstream 78022 36472792 ~ 36488924 (-) False LOC110510210
TU2491621 other downstream 422436 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1575965 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1575965 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 2043455 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 2237949 34121482 ~ 34147319 (-) False G2177991
TU2491931 other upstream 109703 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other upstream 111770 36506540 ~ 36507120 (-) True G2180120
TU2491922 other upstream 139327 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 139327 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 582384 36977154 ~ 36979761 (-) True LOC110509384

Expression Profile