RNA id: TCONS_00006078


Basic Information

Item Value
RNA id TCONS_00006078
length 6618
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_002862
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32077811 ~ 32084624 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCTACTCTATGgcgaaaagaaataaaaatcaagtatcTTGCATTCTTAAAGAAATAGTCTTCATTGATTTCAGACCACTACTCTACTACTTTCTTTGGACGGCAAGTCATAGTCATCTTGACTCTGTCATCCTGCCACAATAAAGTGATAAACAAGGGCTTGATTGATTTGTAGTTGCAATTACTGTGACGTTGTCTGTTAATAGCTTTATGTTCCTGGCTTTTCAACCACATCTACTGCCGCTCTCACAAGATATGACCCTAAAAGGTCAAAAGCTCTAGTCCCCAAGGGTGAATCATAGGTCCAAGGTTACATGGAAATGAGAGACTGATTGCTTCTCAACGACATTTCAAATTCTACTCCTGAAAACAATATTCTGTGATGGATCTGCAGTCCATGAACCAAGGGGTTAAAGAATGACTGCAAATCATCAACAGGCTACAGGGGGCCAAAGCTACTTTTTGAAAAGCctaaactctttttttaaaaagcattataaAGTGGAGACATTAATCATTAACTACGTTGACTTAGTGGGAGAGTAGAGGAAACCGGCAGGAAGTAGTGAACAGAAACAAGATTTTTCTtagtttaaagaaagaaaaaatggcaAAGGATAAATCAGTACGCATTAAAGAACTAAAATCTACCTAAGTAAGGTACTAAATAAATAAGGACAATGACATGAGATGTTAGACAACAACcacaaaattgttaaatattatacCATTAACAATGGAGTGAGTggctattattaaataaaacaataatgaacCTGCCAGCATTACATTCATGGCATtggagaaaatgaaacaaaatctaATCAATCACTAATTAATAAATTTCAAAGACATTTTTCTTGATTTATAGTGACTAAATGAATCTTCTTGTTAAATTAGTGGAGGTAAAAATCCTAGTGCAAAAATGGATGAACCATTACTTACTAACAAGTACTCCCAAAACTGGGAAAGGCATACACTGCCATCTTGTGAACACCCTTAAACATTACAGCGTCagacaaaaactttaaaataaatgcatggcttattttcaacaattttgtttattttagtcaaaTATATATGAATGCTTCCTTCATGAGGAGGGCTTATGGgagaaatgtttacagaaaaatcCATTGATCTAAATAAAACTGCAAACAAATCAACCATTGTAACACATAATGATACAGAGACAGACTCGTTTTTTGTTTGTGCCATGGGATGACATTGTGACAATATAACACAACCAGCGTAATTCATTGTGATGAACTTCCCCCCCAATGCATTTTAGAGGATTTACGTGATTTGAAGTCTTTAAAAGTTCCTGAAGATATTCGGAAATTTCCAAAAAGTCTGGGGTGAAAATGTCCATCCAGACTTTTTGTCTCTTGATTTAAAGACTTATGTAGGGTTTTTGCATAAAGGCACAAAGCAGTAAGAGCCCACAAGGGCATCctattctctctctttctttcttttttttttttttttttggcaagacATTGGTCCCAATTGGCAGTCCTCTTTTTTCATGCCACATATGTAAAAGgaaaaacagataataataaaaaaagacaaaacaccaATAAAACAATCATGTGATTATACTTAAAGTGTACAGGTCTAATTTGTaatcattaactaataaaacaaacatactgAAACCTACAGTCAGATGTGATCTACAGTTTAGCGAATACAGTGGGACATTCTGAAGTTTCAGCAGTGTATGACATCCTAAAGGACAGCTTGTTTGAGGTCAACTAAGCCAAGCCTATTACAGAGGGTACAGCTCAGAATTCACCTTTCCTTGTCTACTCTGCATGCTGGAAAAAGGCAGGACTGCAAGGAGCCGAAGGATGGTTAAAATGTTGGGAAAAGTCTGGATGTCAGAAACTTTCAGTGTGCCAAGGACGGTGTCAGGTAGGTGTTGATGAGTAGCGATAGAGTCTTGCCACCTGTCCCTCCACCTTTGCAGCTCAGCCTGTAAGGAGCTTGGGTCAGGCAAGTCATCCTTAAACACTTTGACAAACTCTGTGTCCTTGCAGCATCCTTCCACTTTGGACATGACATAAGGCACAACCTGCAAGCAGCGAAGAGCAGACAGAACATCCAGGGAGACTCCTTTCACCTCGGAAATACAGTGCTCAATGGCCCCTTTACTGATGTCCTCTTTGTAGTGCACATTTATTGGTGTTTGTAGTGATGGTACCTGCAGCTTAGAAGCTAAAGAAACTGCTTCTTGAAACCAGGTTTCATGGTGCGACTCAAGACGGTTCTTCATTTCACTGAGAGAGGGCAGGACATCAGACAGGCGGTTTACAGCTTGATATACATCATGAGAATTTCCCTGAAGACTCAGGCTTAGGTTTTTGGTGAGGCTCAAGATGTTTTTCATAATCAAAACTGTCAATATGAAGTCAAAGTTTTGGATTGCAGAAAGGAAGCTCTGGGCCTGTGCTGCGTTTGGCTCATTATCTTGGTTTCCTTTCATCTCATTCAAGCAAAGGACGATGGCCTCTAGAATGTCTGTAGTAAGTTCCAGAACCTCATGGCTCATTGCCAGTTGATTGCTGCTGATCATTGCCTTTAGCTCTCTGGCCTTCCTTTCGTCCTTCTGGAACAAATGTACAACAGCATCCTCTAGTCTTACACGACGCTGATGATCCTCAGAGAACCACATAAACAGCTGCTCTAAGTACTCAAAACTTTGAGTTACCTCTCTCAGGGAGGATAAACTGGCTAGCAAAGACTTCAGAGGTATAGGTTTCGGGAAACTGAAAGCATGAGGGAGTCTCTGGGAAAGCAAAGCTGACGCCGGAGTCATCTGCGAGGCATGGGTATCAGATCTTGCCAATGTTTGACTTCTACAAAGTGCCAAATTTAGCCCCCACTTCTCAGAGAGGACGATGATGAGAGAATCCACAAATGAAGCAACGTTTGTGGAAACTGGGAGAAATGCTAATATTTTTTCACACTGAATATCTTGTTTGTCCAGGTAGTGTATTGCTACAGGGATAAATGGTTGGCCATCAATTATCAACTCGTCTTCAGCGACTATAGAAAAGAACTTTATCCTGCAGAGTTCTTTGAGCAAATCTTCTCGAGCAACAGCATCATAGGgagtaaaaatattttgtttatgcgCAGAGTCATCCGGGGTAACTACTTGTTCTGTACCATCCACAACCTTTACTTCAGACTGATCTGTGACTGAATCTGCAGCTATAGGATGATCAGTAATATCCTCAGGTGAAGCAGGTGAGCAATAATCAGTAACACTTGGAGTTTCAAATGGGTGACTGAGGCAAACGTTAACTGCTGCAGTTTCTTGGGCAGAGCCATGTGAAGCCGTTGAATTAAACTGATTTGTGCCACGTTCTGCAGTTAATTTAGGTTGATTGGAGCCATCCTGATCTACTGTAATAGACTGATCAATTTCACTTTGATTCCCTGGTACTATCTGGTCTGATCCCCCCTGACTAACTTCCATAGGCTCATCAGGTACACTTTGATTAGTTGCAATAATAGCTGCTCCTTGACTTTCTACAACAGACTGACCATTTGCACAGGGTTCATCAGCCACAAGCTGATCTCCATCATGATTCCCTGACACTACCTGGTTATTTCCACCTGCATCTGCTAACCCAGATCCACTTGGACATTCTACTATAGGCTGAGAAGCTGTAACTTCAACGAATGCATCAGTTAAATTTTGATCTGAAGATGACTGATTGGTTAGATTTCCTGTTACAAGCTGATCACTTCCAGACTCAACTACCATGAGCTGATCAGATTCACATTGATTACCCAACACTAAATGACTTATTTCCGCTGTTTGTGGTAATACAGACTGAACATCTCCACTCTGAACTGATGTTACAGCCTGGTCATTTTCAGAGTCAACAACCATTAACTGATCGGATTCACATTGATCCGCCAATATTAACTGACTTGTTCCTGCTTCGTTTGGAAATACACTTACAGCCATACCACCTTCATTTTTACCTTCAACTATGGACTGATCTGACTCAACTGTTCTTCACCATCTTCTGCAGAATGATTATTTTCATCTTGACCAACTACCAAGAACTGTTCTGTTATATTTGCATCTCCGGTTTCTGACTGCTCAGTTACATGGTGATCTTCTGTTCCAGACTGGTCATTTCCAGAGTTAAGTACCATAAGTTGATCAGATTCACAATGAGCTACTGACATAAATCCATCTGTATTCACAGACCCTGTTTCTGCCTGACCAGTCTCATCAGGACTAACTACTACTAAATGACCCGTTTCCAAATTATCATCTGTCATGACCTGATCCTTTACATTGTGATCTTCGCCTACTAGCTGACCTGCTTCACCCTGACTAGCTGCTACAGAATGATCACTTCCAAAGTCACACACAATAAGCGAAGTAGATTTACTCTGATTGCCTGACATGAACTCACCTTCATTCGCTAGTCCAGTTTCTGTCTGATCAGTTTCATCTTGACTCTCTACTACTGAATGATGAATCTGTAATTGATCGTCTGCCACGAATTGAGCCTTCACAGTTTTAACTTCagttactgactgaccaatttcAGCCGGATATTCCGCTACAGACTGATCATTTGCAGAGTCACATACCATAAGCTGATCATTTTCCTTTTGATCATCTAATATTACCTCCCCTTTATTTATGAATGCAATTTCATTTAAACTCTCCCCTACTGAATGATTTGATTCCAAATGATGACCTGCCACATCCTTTTTCTTTACAGTCAGATCTTCGGCTACTAATTGACCAGTTTCTCCCTGACCTGCTGCAACAGAATGATCATTTCCAGTGTCAGATAACCCAGTTTCTGTCTGACTAGACTCTTCTTGATTTTGCACTACTGAAAGATTAGTTTCCAAACGATCATCTGTCATGTACTGATTCTTTACATTCTCATCAGTTACTGGCTGACCAGTTTCACCCTGATCTGCTGCTACAGAATGATCATTTCCAGAGTCAAATACAATAACGTGATCAGATTCAATTTGTTCCTCtgattttaaattgttttcatttattaactCGTCTTCTACTTGGCTGGCCTCATCTTGACCTTCTGCTACTAAATGATCAGTTTCCAAAACAACATCTGTCATGACCTGATCATTTACAGTTTGATCTTTagttactgactgaccaatttcACACTGACCTCCGGCTACAGATTGCTCATTTTCAACATAAGACACCTTGAGCTGATCAGATTCACTCAATATTCCAGTATTATCTTGACTCTCTACGACTGAATGATTTGTTTTCAAATTAACATCTGTCATGACCTCATCCTTAACAGTATCATCTTCAGTAACTGACTGGTCGGTAACTGACTGACCAGTTTTACCCTGACCTGCTGCTACAGAGTGATCATTTTCAAAGTTATCCTCAGCTTCATGTTGATCAGATCCTGATTTTGATGCCAACTGATCAGTTTCCCTTGCCATTCCTGTTTCTATCAGACAAGCTTCAACTTGAACTTTTTCCACAGACTGATCGGGTTCAACTGAAGTAACTGCCAATTGCTGATCCTCCAGTTGTTCCCCTGTTGCTGGCTGGCTATCATCACCTTTGTGATCAACTACACATGGAGCATTTCCACTTTCTTCAAATTCCATAACTTGATCAGCTTCACTATGATCCACTGACACCAACTGATCATCTACACTGAGATCAACTGCCATAAGCTGAACAGATTCACTCTGATGCTCTGAAATAAACTGACCATCTGCTATTTCTGTAACTGTATGATAACTTCTGTCTTGAGCGACTATAGAAGAATCATTTTCAAGAATTTCAGATTTGTGAGCAGCTGCCTGCTCAGGTACAACTTGTTCCTCTGCTGTTGGCCTGTCAGTTTCATCTGGTTCTGCTGCAGCAAACTGATCTACCTCCATGAGTGGACTAGATTCACTTTGATCAGCTGATACCAACTGAACACTGTTAACTGGCTGTTCTTCAATAAATGGCTCAGTTACACCTTGACTAGTTATATCAGGGCCTCTATCTACTGGTGCGTCATGAACAACTGGAATCAGCTGATCACAATTGTCATGTTCTGCTTCTGCAGTCTGCATTGTGGCATCTTGAACCGATTCTGTGGGTTGGTCAAGTTTGCTGATTGGCAGTGAGCTGCAAATAGGGATAGCTTGAGCTGTAGCTGTGTTTTTGTCAGAGCTTTGGATTATTAAAGACACTGGCTCGTCAGGTGTACTCATGACAGATGCTTCTTCGGCCACGTCTATTTCACTGGAGCCATTGGTTTCAACTGGAGCTTCCTCTTGAGCAGCCGTTTTAAGATCTAAAAAGATAAGACATGATTGTGTAAAGACAAAAAATGGATTCATGATCATCTACTTTATTTCATACTTATTTAACAttactgaccaatcacagcatcCGTTGCTTCTTGTGTATTACCAGAACCATTTGTGTCCACTGTAATCTCCTGTGGTGCCATGGCAATAACTTCTGagagaggacaaaaaaaaaaagtgtcagaaTAAAAATAACAGCCGCTGGACTCAgttgaccattttaatttctgatTAGCTCAAATAATCAAGAATCAAAAACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006076 lncRNA downstream 782805 31262852 ~ 31295006 (-) True XLOC_002858
TCONS_00005294 lncRNA downstream 783034 31262852 ~ 31294777 (-) False XLOC_002858
TCONS_00006075 lncRNA downstream 2586724 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005269 lncRNA downstream 2939807 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006074 lncRNA downstream 3612785 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00006079 lncRNA upstream 131789 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00006080 lncRNA upstream 145315 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00005771 lncRNA upstream 145315 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00006081 lncRNA upstream 500061 32584685 ~ 32591462 (-) True XLOC_002867
TCONS_00005772 lncRNA upstream 592186 32676810 ~ 32678245 (-) True XLOC_002870
TCONS_00005299 mRNA downstream 271888 31800212 ~ 31805923 (-) True XLOC_002861
TCONS_00005298 mRNA downstream 295195 31738501 ~ 31782616 (-) True XLOC_002860
TCONS_00005297 mRNA downstream 514762 31300589 ~ 31563049 (-) True XLOC_002859
TCONS_00005296 mRNA downstream 515116 31298972 ~ 31562695 (-) False XLOC_002859
TCONS_00005295 mRNA downstream 637311 31298972 ~ 31440500 (-) False XLOC_002859
TCONS_00005300 mRNA upstream 180233 32264857 ~ 32494304 (-) False XLOC_002864
TCONS_00005301 mRNA upstream 180440 32265064 ~ 32494499 (-) False XLOC_002864
TCONS_00005302 mRNA upstream 298953 32383577 ~ 32465462 (-) True XLOC_002864
TCONS_00005303 mRNA upstream 417337 32501961 ~ 32524035 (-) False XLOC_002865
TCONS_00005304 mRNA upstream 417730 32502354 ~ 32524771 (-) True XLOC_002865
TCONS_00005293 other downstream 973057 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 1546554 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 2338703 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005273 other downstream 2369629 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005263 other downstream 3154178 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005308 other upstream 457912 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other upstream 483000 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005329 other upstream 1292194 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 1292377 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 1292506 33377130 ~ 33377214 (-) True XLOC_002885

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_15483378_15486113.mRNA True 3009 mRNA 0.43 1 CI01000304 15483378 ~ 15486386 (+)