RNA id: TCONS_00058259


Basic Information

Item Value
RNA id TCONS_00058259
length 797
lncRNA type sense_over
GC content 0.36
exon number 3
gene id XLOC_028927
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 34797793 ~ 34799395 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttatttattttttataggaacAGACACCataatgatatttgtttttaagAGCTTTTATGAGGAGTAAAGGCTGCAAAGTGTCAAGGTGGACCTGTGACAAAGTTCCTCATCCACTGCAAAAAGGCAGCACATCTTGTGTTTTTTTGTATGCAAGGTATGGAAAATAAGGTTGCTAAATTgacttgtatttgtttttaatgttttttttttttttttaagtttgcagAAAAAATCTTACAGGATGACATGATCACCTTTTCTAATTCAAAGTAGGGCATAGACAAAATAAGAAGAGAAATTGCGGACACTCTTGTGCAGGAATCAGAAGATTTAACAGAGCTGTGTCAGTTTTGTGGACTCAGTGATCCAAGTGATAATGACCAAACCTCAGCTTGGATTGCCTGTGATGGATGTAACCGGAGGTACCACCAATCATGTGTTGGCAACCCGCCAGTATGCAAAGAATATTTCTGCCCAGCTTGCACTAGTAAAATCCATAAGATGAAAacagttttttctttttcccGAAGTCcatctaaataaatgtttgtttttcttaagTTGTCTTTTCCTGTGCTTTCATTGTTATGACTGCATGCTTTACAGATGACAACGATCTGATGTCGTAACATCCTAAATGGTGTCTCTGTATTTTGCTGTATAATTCTAAAAGTCTTAGATAAACACCATGACCAAAGTTTTCCTCTGAATGTTGCACTGTACACTGCATAAGTGTTGCTGTGTGTACGTGTATAAATCAtaacatttgcattaaataaGAATTAGCAATGTGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057373 lncRNA downstream 223651 34555326 ~ 34574142 (-) True XLOC_028925
TCONS_00058258 lncRNA downstream 276857 34519504 ~ 34520936 (-) True XLOC_028924
TCONS_00057372 lncRNA downstream 303147 34486972 ~ 34494646 (-) True XLOC_028923
TCONS_00057371 lncRNA downstream 303579 34486972 ~ 34494214 (-) False XLOC_028923
TCONS_00058257 lncRNA downstream 339298 34457093 ~ 34458495 (-) False XLOC_028922
TCONS_00058261 lncRNA upstream 48917 34847760 ~ 34857130 (-) False XLOC_028928
TCONS_00058260 lncRNA upstream 48917 34847760 ~ 34857130 (-) False XLOC_028928
TCONS_00055990 lncRNA upstream 54223 34853066 ~ 34857130 (-) True XLOC_028928
TCONS_00057374 lncRNA upstream 253596 35052439 ~ 35053350 (-) True XLOC_028929
TCONS_00057375 lncRNA upstream 261304 35060147 ~ 35083283 (-) True XLOC_028930
TCONS_00055987 mRNA downstream 21646 34753619 ~ 34776147 (-) False XLOC_028926
TCONS_00055988 mRNA downstream 22031 34753927 ~ 34775762 (-) True XLOC_028926
TCONS_00055984 mRNA downstream 317182 34449366 ~ 34480611 (-) False XLOC_028922
TCONS_00055985 mRNA downstream 317194 34468977 ~ 34480599 (-) True XLOC_028922
TCONS_00055983 mRNA downstream 337492 34449366 ~ 34460301 (-) False XLOC_028922
TCONS_00055993 mRNA upstream 1052246 35851089 ~ 35899188 (-) False XLOC_028936
TCONS_00055994 mRNA upstream 1094017 35892860 ~ 35900331 (-) False XLOC_028936
TCONS_00055995 mRNA upstream 1094404 35893247 ~ 35989274 (-) False XLOC_028936
TCONS_00055996 mRNA upstream 1149970 35948813 ~ 35963515 (-) False XLOC_028937
TCONS_00055997 mRNA upstream 1161177 35960020 ~ 36026650 (-) False XLOC_028937
TCONS_00055986 other downstream 208706 34553067 ~ 34589087 (-) False XLOC_028925
TCONS_00055976 other downstream 829441 33968210 ~ 33968352 (-) True XLOC_028919
TCONS_00055975 other downstream 830725 33966917 ~ 33967068 (-) True XLOC_028918
TCONS_00055967 other downstream 1405872 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055966 other downstream 1407409 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055991 other upstream 434454 35233297 ~ 35233413 (-) True XLOC_028931
TCONS_00055992 other upstream 936163 35735006 ~ 35735169 (-) True XLOC_028934
TCONS_00056013 other upstream 1990294 36789137 ~ 36789707 (-) False XLOC_028946
TCONS_00056015 other upstream 1991336 36790179 ~ 36790965 (-) True XLOC_028946
TCONS_00056020 other upstream 2468367 37267210 ~ 37271230 (-) False XLOC_028950