RNA id: TU2491931



Basic Information


Item Value
RNA id TU2491931
length 638
RNA type TUCP
GC content 0.61
exon number 12
gene id LOC110510209
representative False

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36499597 ~ 36596534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTGTGACAGGGGGAGCAGGGGCCTGCTGGTGACCAGGGCAGGACTGGCCTTGATGGACTACCAGGGATGAAGGGCTTACCAGGAGAGAAGGCTGTTCCTGGCTCCTATGACAACATCGGCCTTGGCCAAGTCGTTCAGGGTCTCCCAGGGCCACCAGGGCCCCCAGGAGGCCAAGGGTCAAAGGGAGAGTCAGGCTCACCTGGTGCACCTGGAGCTGATGGGGATAAGGGAGCCAAAGGGGATAGAGGTGATGATGGGATGCCTGGAGTggcaggggagaagggagagcgAGGCCTGATGGGCCAAACTGGGCTTGCGggaGCTGACGGTAagaagggagagcgaggggatTCAAGGTTTGAGGACAATCTGGCCCAGAGGATCTCTATCCCAGGCCCTCCAGGGCCTCCCGGGCCCCAGGGTTTCATGGGACTTGATGGAAGGCCTGGCCCCAAGGGGGAACCAGGTGAGGGAGTGAAAGGAGATAAGGGGGATGCAGGCGACAAAGGTCCTCCTGGGCTAAGGGGTACCCAGGGTCTTCCAGGTTCTACGGGGTTGGTTGGTCTCCCTGGCACCAAAGGGGGAAAGGGAGAGCAAGGATTGCCGGGATTAGATGGTTTCCCCGGGCTGATGGGAc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2491911 lncRNA downstream 6982 36497188 ~ 36497491 (-) True G2180114
TU2491909 lncRNA downstream 14575 36489612 ~ 36489898 (-) True G2180112
TU2491907 lncRNA downstream 34600 36468573 ~ 36469873 (-) True G2180110
TU2491895 lncRNA downstream 53147 36451116 ~ 36451326 (-) True G2180103
TU2491894 lncRNA downstream 54167 36450016 ~ 36450306 (-) True G2180102
TU2491945 lncRNA upstream 5145 36517334 ~ 36519604 (-) True G2180121
TU2491978 lncRNA upstream 52635 36564824 ~ 36566964 (-) False G2180150
TU2491976 lncRNA upstream 53784 36565973 ~ 36567413 (-) True G2180150
TU2492005 lncRNA upstream 90004 36602193 ~ 36602486 (-) True G2180177
TU2492281 lncRNA upstream 170823 36683012 ~ 36684870 (-) True LOC110510204
XM_036968201.1 mRNA downstream 15549 36472792 ~ 36488924 (-) False LOC110510210
XM_036968202.1 mRNA downstream 15549 36472792 ~ 36488924 (-) False LOC110510210
XM_036968203.1 mRNA downstream 15549 36472792 ~ 36488924 (-) False LOC110510210
XM_036968205.1 mRNA downstream 15549 36472792 ~ 36488924 (-) False LOC110510210
XM_036968206.1 mRNA downstream 15549 36472792 ~ 36488924 (-) True LOC110510210
XM_036967853.1 mRNA upstream 131759 36643948 ~ 36661243 (-) False LOC110510208
XM_021591591.2 mRNA upstream 131759 36643948 ~ 36663307 (-) False LOC110510208
XR_002471538.2 mRNA upstream 133347 36645536 ~ 36663311 (-) True LOC110510208
XM_036967854.1 mRNA upstream 152813 36665002 ~ 36682231 (-) True gfpt2
XM_021591580.2 mRNA upstream 171877 36684066 ~ 36693105 (-) False LOC110510204
TU2491621 other downstream 541641 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1695170 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1695170 34803191 ~ 34809303 (-) True G2178372
TU2489664 other downstream 2162660 34338911 ~ 34341813 (-) True LOC110510135
TU2489480 other downstream 2357154 34121482 ~ 34147319 (-) False G2177991
TU2491922 other upstream 21908 36534097 ~ 36596306 (-) False LOC110510209
TU2491926 other upstream 21908 36534097 ~ 36596373 (-) True LOC110510209
TU2492418 other upstream 464965 36977154 ~ 36979761 (-) True LOC110509384
TU2492475 other upstream 469768 36981957 ~ 36982709 (-) True G2180587
TU2493150 other upstream 720680 37232869 ~ 37233899 (-) True G2181143

Expression Profile