RNA id: TU2491922


Basic Information

Item Value
RNA id TU2491922
length 588
RNA type TUCP
GC content 0.45
exon number 3
gene id LOC110510209
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36499597 ~ 36596534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAACATTCATTCTTGTGATGGCTCCGCTACAGTAACAAACTGGGATTACAACAATCGAAATATTTATATTTGGAAATTTGACATACAGGAAAATAGCCTATAATTCATTAACGGATTTTTTTGCAGTTTGCACGAATCATTTTACTGCAGATGCCAGGATGGGATCCCCCGCAAAATCTGACGAAAAGACCATGGACTCAATCAACTACAACAGCCACAAATCCAATTTTTCGCATTGTTTAGGCGGGCTGCCAACCGCATTTTGCGTCATTTTGTCGGTGTGTTCTATGGCATTTTGTTTTTTGGTAAACTTCAGGACAGCTCACCTGGAGTACAGAGTGCAGACtttggagatggagagaatgtcCCCGATCCCTTCCGATGAGAATGGAACGGTACCTGGTCTTCAGGATATCATTGAAAAACTAGTGCACGAGAGACTGACCAAAGCACTGCCCAAACTTCGCGCTGCCAGGGATGTCATTCAAGAGTGCTCCTGTCCTCCAGGGCCTCCAGGAAAACGGGGAAGGATGGGAAGACGAGGCGACTCTGGTAACCAGTCTCTCTTAGTTCCTTTGTTCCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2491945 lncRNA downstream 14493 36517334 ~ 36519604 (-) True G2180121
TU2491939 lncRNA downstream 25768 36504473 ~ 36508329 (-) False LOC110510209
TU2491911 lncRNA downstream 36606 36497188 ~ 36497491 (-) True G2180114
TU2491909 lncRNA downstream 44199 36489612 ~ 36489898 (-) True G2180112
TU2491907 lncRNA downstream 64224 36468573 ~ 36469873 (-) True G2180110
TU2492005 lncRNA upstream 5887 36602193 ~ 36602486 (-) True G2180177
TU2492281 lncRNA upstream 86706 36683012 ~ 36684870 (-) True LOC110510204
TU2492288 lncRNA upstream 102403 36698709 ~ 36699060 (-) True G2180417
TU2492291 lncRNA upstream 105219 36701525 ~ 36701818 (-) True G2180420
TU2492292 lncRNA upstream 105612 36701918 ~ 36702143 (-) True G2180421
XM_036968201.1 mRNA downstream 45173 36472792 ~ 36488924 (-) False LOC110510210
XM_036967853.1 mRNA upstream 47642 36643948 ~ 36661243 (-) False LOC110510208
XM_021591591.2 mRNA upstream 47642 36643948 ~ 36663307 (-) False LOC110510208
XR_002471538.2 mRNA upstream 49230 36645536 ~ 36663311 (-) True LOC110510208
XM_036967854.1 mRNA upstream 68696 36665002 ~ 36682231 (-) True gfpt2
XM_021591580.2 mRNA upstream 87760 36684066 ~ 36693105 (-) False LOC110510204
TU2491931 other downstream 21908 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other downstream 26977 36506540 ~ 36507120 (-) True G2180120
TU2491621 other downstream 571265 35961984 ~ 35962832 (-) True G2179862
TU2489908 other downstream 1724794 34803191 ~ 34809303 (-) False G2178372
TU2489911 other downstream 1724794 34803191 ~ 34809303 (-) True G2178372
TU2492418 other upstream 380848 36977154 ~ 36979761 (-) True LOC110509384
TU2492475 other upstream 385651 36981957 ~ 36982709 (-) True G2180587
TU2493150 other upstream 636563 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 638487 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 638640 37234946 ~ 37239793 (-) False LOC110510193

Expression Profile