RNA id: XM_036967970.1


Basic Information

Item Value
RNA id XM_036967970.1
length 3442
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110510200
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36935309 ~ 36950122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTCATATTGCACTAAGTATTATTTAACCACCTGGAAGACATTCAATGTTTTGTGGTTAAACACGTGAGGTGCTACTTTTAGACTTTGCACCTCAGACTCCAGGTCTTTCTCCTTAACACATTGTCAAAAGAGGAGTATACTGTCATTGTTTGGTGGTAAAGTGTTGGGCATAAGACGCATGCCCCTCCAGGACTCATCATGTGCTCTGGTGAAGAGGAAATACCTGGGACAACAGTCACACCTGGACGGAGACGGAGACATCCTTCCCGACCCCCCAAAAACCTGGCCTGAATCCCCACTCAAAAAAGCACATGATATTGCTTCGTCAATGTCCCAGACTCAGGCAGAGAGAATGAGATCAGTTTTCATCAACGTCTCCAAGATCCCcctgctcttcctcttcctgtacaTGTTCGTCTGTTCGTTGGATGTCCTGAGTTCTGCCTTCCAGTTAGCAGGAGGTAAGGTGGCTGGGGACATCTTCAACGACAATGCCATACTGTCCAACCCGGTGGCAGGGCTGGTGGTGGGAATCCTGGTGACGGTTCTGGTCCAGagctcctctacctccacctccattgTCGTCAGCCTCGTCTCCTCGGGCcTACTCAATGTGAGGTCTGCCATCCCAATCCTCATGGGATCCAACATTGGGACGTCTGTCACCAACACCATCGTTGCTCTGATGCaggctggagagagggatgagtttGAACGGGCATTTGCTGGAGCGACGGTGCATGACTGTTTTAACTGGCTGTCAGTGCTGGTGCTACTGCCCCTGGAGGCAACCACAGGCCTGCTGAGAAGACTGTCTCAGGCTGTAGTTGACACCTTCCACATCAGCTCTGGAGATAAGGCCCCAGAGATGCTCAAGGTCATGACTGAACCACTCACCAAACTCATCATTCAGTTGGACAAGTCTGTCATCACAGGCATCGCCATGGGAGATGAGGCCATGAGTAACAGGAGTCTGGTGAGGGTATGGTGTAAGAATCACATCCTAACGTCCTCTGTGAATGTTTCTGTTGGTGATTCCTTCAACTGTACGTCAGTACAACCCTGCTGGCAAAGCAATGCAACAACCTGGACAACACAGAACATGACTCTGCTTGTAAATATAGAAAAATGCAGCCATCTGTTTGTGGACTCGTGGTTGTCCGACCTGGCGGTAGGCCTCATTCTGCTAGCCTGCTCTCTTCTGCTCCTGTGCACCTGTTTGTTGCTGCTGGTCAAGCTGCTCAATTCCCTGCTCCAAGGCCAGGTGGCTAAGGCCATCCAGAGGATCATCAACACAGacTTCCCCTACCCGTTTGGCTGGCTGGCAGGTTACCTGGCCATCCTAGTGGGGGCTGGCATGACCTTTGTGGTTCAGAGCAGCTCAGTGTTCACCTCTGCCATCACTCCTCTCATAGGTATTGGTGTTATCAGCATTGAACGTGCCTACCCTTTGACCCTGGGGTCAAACATTGGTACAACCACCACAGCTATCCTGGCAGCCTTGGCAAGCCCAGGGGACAAGCTGGCCGCAGCTTTCCAGGTTGCCTTGTGTCATTTCTTCTTCAACATACTGGGCATTCTGCTGTGGTACCCTGTGCCCACCACCCGCCTGCCTATCCGAATGGCCAGGACTCTGGGGCAGCGCACGGCCAAGTATCGCTGGTTCGCTGTACTCTACCTGCTTCTGTGCTTCCTGCTCCTGCCCTCGCTTGTCTTCGCCCTCTCCATGGCAGGCTGGCAgataatggctggggtgggcGTGCCCGTCGCTGCGGCCCTCCTCTTGGTGTCTGTGGTGAACATGCTGCAGGTACACAGGCCAGGCTGTCTGCCAGTGAGGCTGCGGAGCTGGGACTTCCTGCCTGTCTGGATGCATTCCCTTCAACCCCTGGATACTCTACTCACCAAGGTGACCCTGTGCTGTGCTAAAGGAGCCAGCGAGCCTGGTTTGATACAGTGCTCCATGGACCATGATGGTCCTCAGAAGAGGAGCCACATGGCTTTGGACAACCTTGTTCTGTGTTACATAGACGAGGCCCCCACTGTGGTAATGTCCCAGGGGGCAGACGAAGCCCCCACAGTGGTAATGTCCCAGGGGGCAGATGAAGCCCCCACAGTGGTAATGTCCCAGGGGTTAGACAAAGCCCCCACAGTGGTAATGTCCCAGGGGTCAGACGAAGCCCCCACAGTGGTAATGTCCCAGGGGGCAGACAAAGCCCCCACAGTGGTAATGTCCCAGGGGGCAGACAAAGCCCCCACAGTGGTAATGTCCCAGGGGGTGGACAGGGTCAGGAGCACACGTCTGTAGATCTTATGACACTGGAACAACAGGGAGACAGAGCAGAATATCTTGTGAAAGCAGCATTGTGGACTGCAAGAAATGAGCAGTGATGATCTAATGTTATGGAACAACGAGACTGAAGCAGAAAACTGTAGGAGCTTATGGTTGCATGAAAACGTGACTCCACTCACAGTCAGTTCCTTTATGGATTGCGTAAATCATGCATGATGCCAGCAGCTACAAAACAATGTTTACTGTAGTTGAGTTATGTCATGTACTGTACTTCGAAGCCACGGAATCAATGAGAGTTTATTATTTACCCACAGTAACTCTCTTTCCAGACAAATGTTTGGGCCTATCGCCTACAGGACATATGTATTATATCATAATTTCCCACAATCAGGATAGCATTTCACTTTCTGTCAAAACAAACACTTCTTCCTCTTTGCTCTCAGTCAGGAGAGGTTAGtaaatgtctgtctctctgctgaaaATGCAGGAAGTCTGATTGAATAGAACGACAAAAACCACTCAGCCAATTAAAAGGCCTTAAAAAAAAGAATACAAGTTATGCATATGAATGGCTGCGTAATTGAAGCTATATAGGAGGGAATGGGCGCCTCCACACGCTAATTATAACGCAGCGGGGCTCTGAATGGTTGATTAAACATCCATTTGGTGGCATAATGGCAAGTGATTTCCCCAGTTTCAATACATTTTAGGCTTAACGTCTCCTCGCTACTCTTTGAACAATTGGTACTTTTAACCACATGCATATTCCAGAGAGTTAAAATGAGATGATTTGATCATTTTGTTCAAAATCACAATTATTGTACATATAGGAGTTTCATATTTGGGATGAGATGGGAAGCAATTGTTATATATGCTAAATGTATCAAGTCCACTGTGTGTAACACAGATAGACATTCATCTGTCTTTCCTGTTTAAAAGACACAGCGGAGCAGGGCTTTTCACCAGACCAGTTTCTCCAACCGAGCTGAGACAGACAAGACAGTTGCCAGTGTCATGAAACTAGAAGCTAGAATAGAATTGAGTAATAATTCAGAATATACCACATCTAACAGTCGGCAGAAAGGTAGTTTGATATCATCCATAATAGCCAAGGACGATAGATGAAGAACAGCCATGAGATGGCATG

Function

GO:

id name namespace
GO:0035435 phosphate ion transmembrane transport biological_process
GO:0044341 sodium-dependent phosphate transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K14683 SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2492422 lncRNA downstream 36969 36897871 ~ 36898340 (-) True G2180539
TU2492316 lncRNA downstream 105148 36828934 ~ 36830161 (-) True G2180443
TU2492354 lncRNA downstream 133423 36801661 ~ 36801886 (-) True G2180481
TU2492353 lncRNA downstream 134161 36800844 ~ 36801148 (-) True G2180480
TU2492292 lncRNA downstream 233166 36701918 ~ 36702143 (-) True G2180421
TU2492459 lncRNA upstream 2714 36952836 ~ 36962231 (-) False LOC110510199
TU2492460 lncRNA upstream 2714 36952836 ~ 36962231 (-) True LOC110510199
TU2492463 lncRNA upstream 6924 36957046 ~ 36957520 (-) True G2180575
TU2492467 lncRNA upstream 10460 36960582 ~ 36961143 (-) True G2180579
TU2492476 lncRNA upstream 45027 36995149 ~ 36995363 (-) True G2180588
XM_021591578.2 mRNA downstream 93179 36832263 ~ 36842130 (-) True LOC110510202
XM_036967825.1 mRNA downstream 93563 36832263 ~ 36841746 (-) False LOC110510202
XM_036967824.1 mRNA downstream 94825 36832263 ~ 36840484 (-) False LOC110510202
XM_036967492.1 mRNA downstream 139854 36705887 ~ 36795455 (-) False LOC110510203
XR_002471537.2 mRNA upstream 2717 36952839 ~ 36962258 (-) False LOC110510199
XR_005040451.1 mRNA upstream 25787 36975909 ~ 36977676 (-) False LOC110509384
XM_021591571.2 mRNA upstream 109072 37059194 ~ 37068883 (-) False LOC110510195
XM_036967468.1 mRNA upstream 109072 37059194 ~ 37072763 (-) True LOC110510195
XM_036967193.1 mRNA upstream 285183 37235305 ~ 37238024 (-) False LOC110510193
TU2491926 other downstream 338936 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 339003 36534097 ~ 36596306 (-) False LOC110510209
TU2491931 other downstream 423120 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other downstream 428189 36506540 ~ 36507120 (-) True G2180120
TU2491621 other downstream 972477 35961984 ~ 35962832 (-) True G2179862
TU2492418 other upstream 27032 36977154 ~ 36979761 (-) True LOC110509384
TU2492475 other upstream 31835 36981957 ~ 36982709 (-) True G2180587
TU2493150 other upstream 282747 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 284671 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 284824 37234946 ~ 37239793 (-) False LOC110510193

Expression Profile