RNA id: TU2492418


Basic Information

Item Value
RNA id TU2492418
length 1067
RNA type TUCP
GC content 0.49
exon number 5
gene id LOC110509384
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36975909 ~ 36979761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactgattggctcaaacacattaagaaggaaagcaattccacaaatgtacttttaacaaagcacacctgccTTTCTGGCTTTGAGGTTCAGGGGTTACCACAATGACTTCCTCCTCGAAAGCTGACAGCTGTATGTGAGAGAAAGTCACTTGAAGTAGTTTCTCAAGACTTTTTCTCTTGTTACATTCATCTTTTAAATGTCCTATACATTTTCACAATTCTCCAATTTAGACAGTAATAACAATCAAGTTTTCTCTATTCAAAACCACACATTTCAAAGTGAAGCATACATTGTAGTTTCTGTATTACATCCAATACAGCCCTGTTGTTAATGTCTCCAGAGTTGAATGGGGTGTCAGGGGCGCAAGGGGCCAGTGTTGGCCTGTGTTCCAGCAGTAACTCCAATCTCCCCACAGTGCCCAGTGAGGAAGCCAGTGGTGTGGGAAAGTTGACCAGCTGGGCTGTCAGCTTCGAGAGGCTCCTGCAGTGTCCTATACTTCACGTTAAACCAGGAGGCTCGCTCCGTCTACAACACCTACCTCTCAGGCAGTGCTTCCCATCCCATCAACATTGATGACGCAGTCCGCATTGAGGAGCGGGACGTGAGAAACCCTCACCGTGACATGTATCACAAGACCCCAAAACAGgCCTTCAAGCTGATGAAGTTTGACAGCTACACGCGCTTTGTTCGCTCCCAGCTCTACCAGAGCTGCATGTTGACCAATGTGGAGGGCAGGCCTCTACCTGAGCTGGGACCCTGCTCGAAGAGCACAGCGACCAGGAAAACTGCTGGGACTGACAGCGCCTCACTCAGTGACAGGCACAAGGCTGACCAGAAACCCCAAAAAGAAACCAAAGGTCAAACCGGGAAAGTCTCTTCCTTTGGATGTGGACGAGGGAGCAGAGAAGAAGATGAAAGCTCTACAGAACAAGTTGACCAGAGACAAACTTCAGGAAAAGAGGTGCTCGTGGggagAGCTTGCTGACCATGCTGCAGTCTTACAGAGCAATGCCGGGGTCTCTCCTCAATGCAGTAGAGGTAAGCACACCACACACCAAGCTCTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2492459 lncRNA downstream 14923 36952836 ~ 36962231 (-) False LOC110510199
TU2492460 lncRNA downstream 14923 36952836 ~ 36962231 (-) True LOC110510199
TU2492467 lncRNA downstream 16011 36960582 ~ 36961143 (-) True G2180579
TU2492463 lncRNA downstream 19634 36957046 ~ 36957520 (-) True G2180575
TU2492422 lncRNA downstream 78814 36897871 ~ 36898340 (-) True G2180539
TU2492476 lncRNA upstream 15388 36995149 ~ 36995363 (-) True G2180588
TU2492477 lncRNA upstream 24183 37003944 ~ 37004146 (-) True G2180589
TU2492478 lncRNA upstream 26095 37005856 ~ 37022512 (-) True G2180590
TU2492479 lncRNA upstream 28006 37007767 ~ 37025924 (-) True G2180591
TU2492480 lncRNA upstream 62031 37041792 ~ 37042209 (-) True G2180592
XR_002471537.2 mRNA downstream 14896 36952839 ~ 36962258 (-) False LOC110510199
XM_036967967.1 mRNA downstream 27032 36935309 ~ 36950122 (-) False LOC110510200
XM_036967968.1 mRNA downstream 27032 36935309 ~ 36950122 (-) False LOC110510200
XM_036967969.1 mRNA downstream 27032 36935309 ~ 36950122 (-) False LOC110510200
XM_036967970.1 mRNA downstream 27032 36935309 ~ 36950122 (-) True LOC110510200
XM_021591571.2 mRNA upstream 79433 37059194 ~ 37068883 (-) False LOC110510195
XM_036967468.1 mRNA upstream 79433 37059194 ~ 37072763 (-) True LOC110510195
XM_036967193.1 mRNA upstream 255544 37235305 ~ 37238024 (-) False LOC110510193
XM_036967197.1 mRNA upstream 255544 37235305 ~ 37238282 (-) False LOC110510193
XM_036967194.1 mRNA upstream 255544 37235305 ~ 37238283 (-) False LOC110510193
TU2491926 other downstream 380781 36534097 ~ 36596373 (-) True LOC110510209
TU2491922 other downstream 380848 36534097 ~ 36596306 (-) False LOC110510209
TU2491931 other downstream 464965 36504473 ~ 36512189 (-) False LOC110510209
TU2491944 other downstream 470034 36506540 ~ 36507120 (-) True G2180120
TU2491621 other downstream 1014322 35961984 ~ 35962832 (-) True G2179862
TU2492475 other upstream 2196 36981957 ~ 36982709 (-) True G2180587
TU2493150 other upstream 253108 37232869 ~ 37233899 (-) True G2181143
TU2493155 other upstream 255032 37234793 ~ 37239339 (-) False LOC110510193
TU2493152 other upstream 255185 37234946 ~ 37239793 (-) False LOC110510193
TU2493153 other upstream 255185 37234946 ~ 37239339 (-) True LOC110510193

Expression Profile